View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_14 (Length: 322)
Name: NF11369_low_14
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 6271534 - 6271414
Alignment:
| Q |
18 |
gatagatggcattatgggtgacaaaactgcccatactttggcaagaaagtacaatctggctgttgcagatgagtgaaagggttcatttggattaactatt |
117 |
Q |
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| T |
6271534 |
gatagatggcattatgggtgacaaaactgcccatactttggcaagaaagtacaatctggctgttgcagatgagtg-aagggttcatttggattaactatt |
6271436 |
T |
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| Q |
118 |
tgtgtaaattgccttttcttta |
139 |
Q |
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||||||||| |||||||||||| |
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| T |
6271435 |
tgtgtaaatagccttttcttta |
6271414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 9825495 - 9825615
Alignment:
| Q |
18 |
gatagatggcattatgggtgacaaaactgcccatactttggcaagaaagtacaatctggctgttgcagatgagtgaaagggttcatttggattaactatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9825495 |
gatagatggcattatgggtgacaaaactgcccatactttggcaagaaagtacaatctggctgttgcagatgagtg-aagggttcatttggattaactatt |
9825593 |
T |
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| Q |
118 |
tgtgtaaattgccttttcttta |
139 |
Q |
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||||||||| || ||||||||| |
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| T |
9825594 |
tgtgtaaatagcattttcttta |
9825615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 313
Target Start/End: Original strand, 9825740 - 9825900
Alignment:
| Q |
164 |
tgatcagattcattgttagtgttttgtgtaaatcgaaattttattccattggaaaatactaaaaatag-----------gacttgtgtgaaatgcaatta |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
9825740 |
tgatcagattcattgttagtgttttgtgtaaatcgaattttttttccattggaaaatactaaaaattgccaaaaaataagactcacacgaaatgcaatta |
9825839 |
T |
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| Q |
253 |
ttgaagtagatttacttttctatccttatgaacagttttctggattatcccttctctgtgc |
313 |
Q |
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| T |
9825840 |
ttgaagtagagttacttttctatccttatgaacagttttctggattatcctttctctgtgc |
9825900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 6271289 - 6271129
Alignment:
| Q |
164 |
tgatcagattcattgttagtgttttgtgtaaatcgaaattttattccattggaaaatacta-----------aaaataggacttgtgtgaaatgcaatta |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |||| |||||||||||| |
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| T |
6271289 |
tgatcagattcattgttagtgttttgtgtaaatcgaatattttttccattggaaaatactacaaattgccaaaaaataagactcacacgaaatgcaatta |
6271190 |
T |
|
| Q |
253 |
ttgaagtagatttacttttctatccttatgaacagttttctggattatcccttctctgtgc |
313 |
Q |
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| T |
6271189 |
ttgaagtagagttacttttctatccttatgaacagttttctggattatcctttctctgtgc |
6271129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 6262105 - 6261994
Alignment:
| Q |
22 |
gatggcattatgggtgacaaaactgcccatactttggcaagaaagtacaatctggctgttgcagatgagtgaaagggttcatttggattaactatttgtg |
121 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| ||||||| |||||||||||| |
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| T |
6262105 |
gatggcattatggatgacaaaactgcccatactttggcaagaaagtacaacctggcggttgcagatgattg-aagggtttatttggactaactatttgtg |
6262007 |
T |
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| Q |
122 |
taaattgcctttt |
134 |
Q |
| |
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||||| ||||||| |
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| T |
6262006 |
taaatagcctttt |
6261994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 6261810 - 6261731
Alignment:
| Q |
223 |
taaaaataggacttgtgtgaaatgcaattattgaagtagatttacttttctatccttatgaacagttttctggattatcc |
302 |
Q |
| |
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|||||||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
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| T |
6261810 |
taaaaataagactcgcgtgaaatgcaattattgaagtagagttacttttctatccttatgaacggttttcgggattatcc |
6261731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 6261894 - 6261831
Alignment:
| Q |
164 |
tgatcagattcattgttagtgttttgtgtaaatcgaaattttattccattggaaaatactaaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
6261894 |
tgatcagattcattgttagtgttttgtgtaaatcaaaattttattccattggaaaatgctaaaa |
6261831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 164 - 313
Target Start/End: Original strand, 35682293 - 35682457
Alignment:
| Q |
164 |
tgatcagattcattgttagtgttttgtgtaaatcgaaattttattccattggaaaatactaaaaatag---------------gacttgtgtgaaatgca |
248 |
Q |
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|||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||||||| | |||| | |||||||||| |
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| T |
35682293 |
tgatcagattcagtgttagtgttttgtctaaatcaaaattttattccattggaaaatgctaaaaattgccccaaaaaaattaagactcgcgtgaaatgca |
35682392 |
T |
|
| Q |
249 |
attattgaagtagatttacttttctatccttatgaacagttttctggattatcccttctctgtgc |
313 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||||| |
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| T |
35682393 |
attattgaagtagagttacttttctatccttttgaacggtttactggattatcctttctctgtgc |
35682457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 35682061 - 35682161
Alignment:
| Q |
37 |
gacaaaactgcccatactttggcaagaaagtacaatctggctgttgcagatgagtgaaagggttcatttggattaactatttgtgtaaattgccttttct |
136 |
Q |
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||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||| ||||||||| |
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| T |
35682061 |
gacaaaactgctcttactctggcaagaaagtacaatctggctgttgctgatgagtg-aatggttcatttggtccaactatttgtgtaaatagccttttct |
35682159 |
T |
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| Q |
137 |
tt |
138 |
Q |
| |
|
|| |
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|
| T |
35682160 |
tt |
35682161 |
T |
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