View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11369_low_16 (Length: 291)
Name: NF11369_low_16
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 1217158 - 1217442
Alignment:
| Q |
1 |
cgttaagttgcatcctggatctcgtgacgctcatacgctgtaagttcnnnnnnnnnnnnnnnnnnnnaatctttcaacattatgctggttgaatttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1217158 |
cgttaagttgcatcctggatctcgtgacgctcatacgctgcaagttcttttctttttgtagttttttaatctttcaacattatgctggttgaatttttct |
1217257 |
T |
|
| Q |
101 |
gactacctttacagttttccagatagtca---------tttgatcgtggaaattcgagattccaagggagagaattttggccgtgttattgtccaagtgg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1217258 |
gactacctttacagttttccagatagtcacagagattatttgatcgtggaaattcgagattccaagggagagaattttggccgtgttattgtccaagtgg |
1217357 |
T |
|
| Q |
192 |
ctaatatatctggtgatggggta----atatttttatgacaatatttttagggagttattaatgcctgtcatgacgagtggtggt |
272 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1217358 |
ctgatatatctggtgatggggtaatatatatttttatgacaatatttttagggagttattaatgcctgtcatgacgagtggtggt |
1217442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 27745375 - 27745534
Alignment:
| Q |
78 |
cattatgctggttgaattt-ttctgactacc---tttacagttttccagatagtc---------atttgatcgtggaaattcgagattccaagggagaga |
164 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||||||||||||||||| ||||| || | ||| ||| ||||||||||||| || |
|
|
| T |
27745375 |
cattatgctggttgaatatattctgactactacatttacagttttccagatagtcttggagatgatttgctcattgaagttcaagattccaagggaaagc |
27745474 |
T |
|
| Q |
165 |
attttggccgtgttattgtccaagtggctaatatatctggtgatggggtaatatttttat |
224 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||| ||| | || |||||||||||||| |
|
|
| T |
27745475 |
attttgggcgtgttcttgtccaagtggctgctatagctgataatccggtaatatttttat |
27745534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University