View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_17 (Length: 274)
Name: NF11369_low_17
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 13411309 - 13411221
Alignment:
| Q |
176 |
agtcactacaccaacaatttcgtgcctgtatttcttataacaattgttagaatggaaatgaatttgttttggtaaccggtaatcctttg |
264 |
Q |
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| T |
13411309 |
agtcactacaccaacaatttcgtgcctgtatttcttataacaattgttagaatggaaatgaatttgttttggcaaccggtaatcctttg |
13411221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 13385288 - 13385136
Alignment:
| Q |
62 |
gcagtaattttcaagactgttatcacaatcttggcacgatctgcaagaaccaactaagcatcccacacccactttgtcatcaactttgaaattttctact |
161 |
Q |
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| T |
13385288 |
gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact |
13385189 |
T |
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| Q |
162 |
ttgcttcccacctcagtcactacaccaacaatttcgtgcctgtatttcttata |
214 |
Q |
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| T |
13385188 |
ttgcttcccacctttgtcactataccaacaatctcatgcctgtatttcttata |
13385136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 13389108 - 13388957
Alignment:
| Q |
63 |
cagtaattttcaagactgttatcacaatcttggcacgatctgcaagaaccaactaagcatcccacacccactttgtcatcaactttgaaattttctactt |
162 |
Q |
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| T |
13389108 |
cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt |
13389009 |
T |
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| Q |
163 |
tgcttcccacctcagtcactacaccaacaatttcgtgcctgtatttcttata |
214 |
Q |
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| T |
13389008 |
tgcttcccacctttgtcactataccaacaatctcatgcctgtatttattata |
13388957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 13393466 - 13393376
Alignment:
| Q |
112 |
caactaagcatcccacacccactttgtcatcaactttgaaattttctactttgcttcccacctcagtcactacaccaacaatttcgtgcct |
202 |
Q |
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| T |
13393466 |
caactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctccgtcactataccagcaatctcatgcct |
13393376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 13419597 - 13419784
Alignment:
| Q |
21 |
ccatcactatatttagcaccatatgtgagtataaattttgtgcagtaattttcaagactgttatcacaatcttggcacgatctgcaagaaccaactaagc |
120 |
Q |
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| T |
13419597 |
ccatcacgatactttgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgt |
13419696 |
T |
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| Q |
121 |
atcccacacccactttgtcatcaactttgaaattttctactttgcttcccacctcagtcactacaccaacaatttcgtgcctgtattt |
208 |
Q |
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| T |
13419697 |
atcccacaccaactttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcattt |
13419784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 13454185 - 13454276
Alignment:
| Q |
105 |
caagaaccaactaagcatcccacacccactttgtcatcaactttgaaattttctactttgcttcccacctcagtcactacaccaacaatttc |
196 |
Q |
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| T |
13454185 |
caagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgcttcccacttctgtaactatgccaacaatttc |
13454276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 13413251 - 13413400
Alignment:
| Q |
20 |
tccatcactatatttagcaccatatgtgagtataaattttgtgcagtaattttcaagactgttatcacaatcttggcacgatctgcaagaaccaactaag |
119 |
Q |
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| T |
13413251 |
tccatcacgatacttggcaccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaag |
13413350 |
T |
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| Q |
120 |
catcccacacccactttgtcatcaactttgaaattttctactttgcttcc |
169 |
Q |
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| T |
13413351 |
tagccaacacctactttgtctccaactttaaacttctccactttgcttcc |
13413400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 13447248 - 13447335
Alignment:
| Q |
121 |
atcccacacccactttgtcatcaactttgaaattttctactttgcttcccacctcagtcactacaccaacaatttcgtgcctgtattt |
208 |
Q |
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| T |
13447248 |
atcccacccctactttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatattt |
13447335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 47601524 - 47601612
Alignment:
| Q |
126 |
acacccactttgtcatcaactttgaaattttctactttgcttcccacctcagtcactacaccaacaatttcgtgcctgtatttcttata |
214 |
Q |
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| T |
47601524 |
acacccactttgtctccaactttgaacttttctactttgcttcccacttttgtcactataccaacaatctcatgtctgtatttcttata |
47601612 |
T |
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