View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11369_low_18 (Length: 270)
Name: NF11369_low_18
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 6452229 - 6451977
Alignment:
| Q |
1 |
gaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgatctcggaaatcctgatggtggcgacgcccttgttcgtccaatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6452229 |
gaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgatctcggaaatcctgatggtggcgacgcccttgttcgtccaatcct |
6452130 |
T |
|
| Q |
101 |
tggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaacggttagtaaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6452129 |
tggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaactagaaaaggttggttcactaccaaagtaacggttagtaaattt |
6452030 |
T |
|
| Q |
201 |
aacgtgtctattttatatgaacgttctaattggttttatgttatatgattctt |
253 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6452029 |
aacatgtctattttatatgaacgttctaattggttttatgttatatgattctt |
6451977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6458322 - 6458081
Alignment:
| Q |
1 |
gaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgatctcggaaatcctgatggtggcgacgcccttgttcgtccaatcct |
100 |
Q |
| |
|
|||| ||||| ||||||||| |||||| | || ||||||||| ||||||||||| | |||||||| |||||||| ||||| ||||| ||||| |||| |
|
|
| T |
6458322 |
gaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttgggaaatccagatggtggtgacgcacttgtccgtcctgtcct |
6458223 |
T |
|
| Q |
101 |
tggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaactagaaaaggttggttcactacc--aaagtaacggttagtaaat |
198 |
Q |
| |
|
||| ||||| |||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||| || || || || ||||||| ||| |
|
|
| T |
6458222 |
tgggggatcaagcacctatccctaccctcgcagggttagaagtggtagaaaaccaaccagaaaaggttagtttgctgccgaaatatagcggttagcgaat |
6458123 |
T |
|
| Q |
199 |
ttaacgtgtctattttatatgaacgttctaattggttttatg |
240 |
Q |
| |
|
|||| |||| ||||| || ||||||||||||||||||||| |
|
|
| T |
6458122 |
ttaatgtgttcattttgtagaaacgttctaattggttttatg |
6458081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 9603196 - 9603271
Alignment:
| Q |
84 |
cttgttcgtccaatccttggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaacta |
159 |
Q |
| |
|
|||| |||||| |||||||||| |||||||| ||||| |||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
9603196 |
cttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaacta |
9603271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42694451 - 42694385
Alignment:
| Q |
1 |
gaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgatctcggaaatcc |
67 |
Q |
| |
|
|||| |||||||||||||||||||| || || || ||||||||||| || |||||| | |||||||| |
|
|
| T |
42694451 |
gaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc |
42694385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University