View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_20 (Length: 242)
Name: NF11369_low_20
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 12322465 - 12322704
Alignment:
| Q |
3 |
cagagaaagaaacttcataaacaacaaaaccaattaagtgactagagagattcgtgagtgcacnnnnnnngtgttctgaggtgacaaaagtgtttgtgat |
102 |
Q |
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| T |
12322465 |
cagagaaagaaacttcataaacaacaaaaccaattaagtgactagagagattcgtgagtgcactttttttgtgttctgaggtgacaaaagtgtttgtgat |
12322564 |
T |
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| Q |
103 |
tataagctataacacgtgacatgttattagtggttcattgttacgtatagtatggtcatagtttcaattcttaggcaatattttcacatgcagctataag |
202 |
Q |
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| T |
12322565 |
tataagctataacacgtgacatgttattagtggttcattgttacgtatagtatggtcatagtttcaattcttaggcaatattttcacatgcagctataag |
12322664 |
T |
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| Q |
203 |
aagattctgcagaaatttcaagaactaagaaagaaagtct |
242 |
Q |
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| T |
12322665 |
aagattctgcagaaatttcaagaactaagaaagaaagtct |
12322704 |
T |
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