View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_25 (Length: 211)
Name: NF11369_low_25
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 2349090 - 2349284
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatattcactatca |
100 |
Q |
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| T |
2349090 |
tggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatattcactatca |
2349189 |
T |
|
| Q |
101 |
agcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggttgtttcgtctcgtcccaag |
195 |
Q |
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| T |
2349190 |
agcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggttgtttcgtctcgtcccaag |
2349284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 2305720 - 2305914
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatattcactatca |
100 |
Q |
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||||||||||||||||||||| || |||||||||||| |||| ||||||| || || |||||| | ||||||||||||||||||||| ||||||| |||| |
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| T |
2305720 |
tggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagggtcttaggtaccttagctgataaatatggaccattattcaccatca |
2305819 |
T |
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| Q |
101 |
agcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggttgtttcgtctcgtcccaag |
195 |
Q |
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| T |
2305820 |
agcttggttctaaacgtgctttaattctcaacaattgggaaatggccaaggaatgttttactacacacgacatggtcgtttcgtctcgtcccaag |
2305914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 2338041 - 2338231
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatattcactatca |
100 |
Q |
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|
||||||||||||||||| ||| || ||||| |||||| |||| ||||||| ||||| |||||| | ||||||||||||||||||||| ||||||| |||| |
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| T |
2338041 |
tggccaatacttggtcatctctcactttttcgtggcacacaatcaccccatagagtcttaggtaccttagctgataaatatggaccattattcaccatca |
2338140 |
T |
|
| Q |
101 |
agcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggttgtttcgtctcgtcc |
191 |
Q |
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| T |
2338141 |
agcttggcactaaacatgctttaatactcaacaattgggaaatggccaaggaatgtttcactacgaacgacacggtcgtttcgtctcgtcc |
2338231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 2295121 - 2295236
Alignment:
| Q |
67 |
ttagctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacac |
166 |
Q |
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|||||||| | ||||||||| |||||||| |||||||| ||| ||| ||||||||| |||| |||||||||||| | ||||| ||||||||||| | | |
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| T |
2295121 |
ttagctgacagatatggacccatattcacaatcaagctaggtgctacacatgctttggtactaaacaattgggaattagccaaagaatgtttcaccaaaa |
2295220 |
T |
|
| Q |
167 |
acgacatggttgtttc |
182 |
Q |
| |
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| ||||| |||||||| |
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| T |
2295221 |
atgacatagttgtttc |
2295236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 2361481 - 2361584
Alignment:
| Q |
58 |
ttaggtccattagctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtt |
157 |
Q |
| |
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|||||| |||| ||||||||||||||||| | |||||||| ||||||||||| |||| |||||| | ||| |||||||||||| || |||||||||| |
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| T |
2361481 |
ttaggtgcattggctgataaatatggacccttgttcactattaagcttggttccaaacgtgctttggttgttagcaattgggaaatggcaaaggaatgtt |
2361580 |
T |
|
| Q |
158 |
tcac |
161 |
Q |
| |
|
|||| |
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| T |
2361581 |
tcac |
2361584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 2366085 - 2366188
Alignment:
| Q |
58 |
ttaggtccattagctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtt |
157 |
Q |
| |
|
|||||| |||| ||||||||||||||||| | |||||||| ||| ||||||| |||| |||||| | |||| |||||||||||| || |||||||||| |
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| T |
2366085 |
ttaggtgcattggctgataaatatggacccttgttcactattaagattggttccaaacgtgctttggttcttagcaattgggaaatggcaaaggaatgtt |
2366184 |
T |
|
| Q |
158 |
tcac |
161 |
Q |
| |
|
|||| |
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|
| T |
2366185 |
tcac |
2366188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 2355807 - 2355901
Alignment:
| Q |
67 |
ttagctgataaatatggaccaatattcactatcaagcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcac |
161 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||| |||||||| ||| ||||||| |||||| ||||| |||||| || |||||||||||||| |
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| T |
2355807 |
ttagctgataaatatggacccttgttcaccatcaaacttggttccaaaaatgctttggtacttagcaattcggaaatggcgaaggaatgtttcac |
2355901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 5806253 - 5806063
Alignment:
| Q |
1 |
tggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaatatggaccaatattcactatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| ||||||| ||| | |||||| | ||| ||||||| |||||||||||||||| |||| |
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| T |
5806253 |
tggccaatacttggtcacctcccaattttttgtggcacacaagcaccccatagaatcttaggtgccctaggtgataaacatggaccaatattcaccatca |
5806154 |
T |
|
| Q |
101 |
agcttggttctaaacatgctttaatacttaacaattgggaaattgccaaggaatgtttcactacacacgacatggttgtttcgtctcgtcc |
191 |
Q |
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|||||||| |||||||||| ||| |||| |||||||||||||| || |||||||||||||||||| | || ||| | |||||||||||||| |
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| T |
5806153 |
agcttggtcctaaacatgccttagtactcaacaattgggaaatggctaaggaatgtttcactacaaatgatatgatcgtttcgtctcgtcc |
5806063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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