View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_4 (Length: 493)
Name: NF11369_low_4
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 78 - 331
Target Start/End: Complemental strand, 46524935 - 46524681
Alignment:
| Q |
78 |
acaatatttgaatggacgttaagaggcattaatttgtttatattgacggtgcagtacagccgaatttccctgatcactgtttctttggttaatgtgtgat |
177 |
Q |
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| T |
46524935 |
acaatatttgaatggacgttaagaggcattaatttgtttatattgacggtgcagtacagccgaatttccctgatcactgtttctttggttaatgtgtgat |
46524836 |
T |
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| Q |
178 |
gttaactgtgnnnnnnnnt-ttacagtgagggacccttccccacaacaaatcctagctgtttgttgaaaagttagcaattcagagctaaagttggaagca |
276 |
Q |
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| T |
46524835 |
gttaactgtgaaaaaaaaaattacagtgagggacccttccctacaacaaatcctagctgtttgttgaaaagttagcaattaagagctaaagttggaagca |
46524736 |
T |
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| Q |
277 |
aacccatcggattttaaccttcagtagaaagaaacttgtccattgtcaaccctac |
331 |
Q |
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| T |
46524735 |
aacccatcggattttaaccttcagtagaaagaaacttgtccattgtcaaccctac |
46524681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 46524999 - 46524955
Alignment:
| Q |
12 |
aatattggtaaaacgagagttaatagtgttgttatttgaatggac |
56 |
Q |
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| T |
46524999 |
aatattggtaaaacgagagttaatagtgttgttatttgaatggac |
46524955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 46524579 - 46524542
Alignment:
| Q |
440 |
ctacaaggttacgacatgttcataaatgtggttcttat |
477 |
Q |
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| T |
46524579 |
ctacaaggttacgacatgttcataaatgtggttcttat |
46524542 |
T |
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