View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_5 (Length: 492)
Name: NF11369_low_5
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 265 - 478
Target Start/End: Complemental strand, 2348802 - 2348589
Alignment:
| Q |
265 |
tgtttgtggatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
364 |
Q |
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| T |
2348802 |
tgtttgtgaatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
2348703 |
T |
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| Q |
365 |
ttgaaaattaccacggctaagattatcggattgagttacgattaggtagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
464 |
Q |
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| T |
2348702 |
ttgaaaattaccacggctaagattatcggattgagttacgattagatagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
2348603 |
T |
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| Q |
465 |
caaccacatgcccc |
478 |
Q |
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| T |
2348602 |
caaccacatgcccc |
2348589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 2349068 - 2348867
Alignment:
| Q |
1 |
ttctttgtttttgctgttagaaaattttgagagtccaaatagaaataaacataggggaattagagaaattaggagtgcaattgttgtagcgtttattaaa |
100 |
Q |
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| T |
2349068 |
ttctttgtttttgctgtgagaaaattttgagagtccaaatagaaataaacataggggaattagagaaattaggagtgcaattgttgtggcgtttattaaa |
2348969 |
T |
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| Q |
101 |
ctgcttaaatctaaatccattgtagctagatggtgttgtgttttggatgaggttggtggatagaagtagaatt--agttgtattactcttgaatgctagc |
198 |
Q |
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| T |
2348968 |
ctgcttaaatctaaatccattgtagctagatggtgttgtgttttgtacgaggttggtggatagaagtagaattagagttgtattactcttgaatgctagc |
2348869 |
T |
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| Q |
199 |
tt |
200 |
Q |
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|| |
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| T |
2348868 |
tt |
2348867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 2348349 - 2348287
Alignment:
| Q |
347 |
taagtgttgttttggaatttgaaaattaccacggctaagattatcggattgagttacgattag |
409 |
Q |
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| T |
2348349 |
taagtgttgttttcgaaattgaaaatcaccatcgaaaagattatcggattgagttacgattag |
2348287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 2305677 - 2305601
Alignment:
| Q |
22 |
aaattttgagagtccaaatagaaataaacataggggaattagagaaat-taggagtgcaattgttgtagcgtttatta |
98 |
Q |
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| T |
2305677 |
aaattttgagaatccaaatagaaacaaacataggggaa-taatgaaataaaggagtgcaattgttgttgagtttatta |
2305601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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