View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_6 (Length: 425)
Name: NF11369_low_6
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 33327658 - 33328073
Alignment:
| Q |
1 |
gaggcacagtccagctcgacggttgtttggtgaagtatgacaatgctacttttttgggtgtggaggataagaatgttttgttgaaaaggtgtgggccttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33327658 |
gaggcacagtccagctcgacggttgtttggtgaagtatgacaatgctacttttttgggtgtggaggataagaatgttttgttgaaaaagtgtgggccttc |
33327757 |
T |
|
| Q |
101 |
cgtgggctataatccagaagccatggggtcgagagatgctgtgcttggcgggcttgtgggcttaggtgggccttttagggttggtgggtcgggtatggta |
200 |
Q |
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| T |
33327758 |
cgtgggctataatccagaagccatgggctcgagagatgctgtgcttggcgggcttgtgggcttaggtgggccttttagggttggtgggtcgggtatggta |
33327857 |
T |
|
| Q |
201 |
cgtggtgtttcccagtgtactggggatcttagttttggggagtgtcaagattgtgttgttgaagcgatcggacggttgaaaagtgattgtggtactgcag |
300 |
Q |
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| T |
33327858 |
cgtggtgttgcccagtgtactggggatcttagttttggggagtgtcaagattgtgttgttgaagcgatcggacggttgaaaagtgattgtggtactgcag |
33327957 |
T |
|
| Q |
301 |
attatggagatttgttcttgggaaaatgttatgcaagatattcgactggtggggcccatgatacttctaaggcccatggtaaggcccgttgtgggctctt |
400 |
Q |
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| T |
33327958 |
attatggagatttgttcttgggaaaatgttatgcaagatattctactggtggggcccatgatacttctaaggcccatggtaaggcccgtcgtgggctctt |
33328057 |
T |
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| Q |
401 |
cttcatgctacctttg |
416 |
Q |
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| T |
33328058 |
cttcatgctacctttg |
33328073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 221 - 352
Target Start/End: Original strand, 29527779 - 29527910
Alignment:
| Q |
221 |
tggggatcttagttttggggagtgtcaagattgtgttgttgaagcgatcggacggttgaaaagtgattgtggtactgcagattatggagatttgttcttg |
320 |
Q |
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||||||| | ||||||| ||||||||||||||||||| || || ||| ||||||||| || ||||||| | ||| |||||||||||| |||||||| |
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| T |
29527779 |
tggggatttgagttttgtggagtgtcaagattgtgttacagaggcaatccgacggttgagaaatgattgtacttctggggattatggagatatgttcttg |
29527878 |
T |
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| Q |
321 |
ggaaaatgttatgcaagatattcgactggtgg |
352 |
Q |
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|| || ||||||||||| || || |||||||| |
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| T |
29527879 |
gggaagtgttatgcaaggtactctactggtgg |
29527910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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