View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11369_low_7 (Length: 420)
Name: NF11369_low_7
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 46525007 - 46525414
Alignment:
| Q |
1 |
taatttaacaacaatattatcatgcaaatgtgcctcaaataattcacatgggttgtgtgaagcaagtgaaagggacatgacacttgattgttctttgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525007 |
taatttaacaacaatattatcatgcaaatgtgcctcaaataattcacatgggttgtgtgaagcaagtgaaagggacatgacacttgattgttctttgtgt |
46525106 |
T |
|
| Q |
101 |
attttgtaactatcccatatagttgaaaaacgttaccattttcatttattcttagttccctaatattatcccatccaaaagacaaaaaacaaagacaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525107 |
attttgtaactatcccatatagttgaaaaacgttaccattttcatttattcttagttccctaatattatcccatccaaaagacaaaaaacaaagacaaga |
46525206 |
T |
|
| Q |
201 |
gatccaaaatccaattttgnnnnnnngaggccaaccaaatatagcatagtttcttagacattaccagtgacatttggcattaggcatatggtgcaagttg |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525207 |
gatccaaaatccaattttgtttttttgaggccaaccaaatatagcatagtttcttagacattaccagtgacatttggcattaggcatatggtgcaagttg |
46525306 |
T |
|
| Q |
301 |
tttcatgcaacaatgtattgtacaacaatgtccggatatctaagcagagaaacaagcttcaaattttgtttcactatgctggctagttgttgtttgcctc |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46525307 |
tttcatg---caatgtattgtacaacaatgtccggatatctaagcagagaaacaagcttcaaattttgtttcactatgctggctagttgttgtttgcctc |
46525403 |
T |
|
| Q |
401 |
ttgtctctgct |
411 |
Q |
| |
|
||||||||||| |
|
|
| T |
46525404 |
ttgtctctgct |
46525414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University