View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11369_low_8 (Length: 401)
Name: NF11369_low_8
Description: NF11369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11369_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 267438 - 267067
Alignment:
| Q |
16 |
gacatcatatgatatgatagagagataattatagcacaccacgaagtgaacaacctggcttggacaaattgcgcttttcgtttttggtaaagcaagatta |
115 |
Q |
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| T |
267438 |
gacatgatatgatatgatagagagataattatagcacaccaagaagtgaacaacctggcttggacaaattgcgcttttcgtttttggtaaagcaagatta |
267339 |
T |
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| Q |
116 |
atttgaaccgaaaacaagataaacaacctgttagaaactttaaattaagttaaaagaccgttgatggtttcattcccttggaagacatttcattgtacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
267338 |
atttgaaccgaaaacaagataaacaacctgttagaaactttaaattaagttaaaagaccgttgatggtttcattcccttggaagacatttcattgtacaa |
267239 |
T |
|
| Q |
216 |
atataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgacattatccggttgtagtcctccgtcaataatttcgtt |
315 |
Q |
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| T |
267238 |
atataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgacattatccggttgtagtcctccgtcaataatttcatt |
267139 |
T |
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| Q |
316 |
gaagagtctgattgcatcgtggaagttatcaacttttaatctcccatcgattagaactctgtaggtaataac |
387 |
Q |
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| T |
267138 |
gaagagtctgattgcatcgtggaagttatcaacttttaatctcccatcgattagaactctgtaggtaataac |
267067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 13587361 - 13587227
Alignment:
| Q |
180 |
tggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgac |
279 |
Q |
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| T |
13587361 |
tggtatcatttcattggaagatatttcattatacaa-tattattgatttctccgtgtgcccactgtttaacaagccaggaactagagcagtgtatgttac |
13587263 |
T |
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| Q |
280 |
attatccggttgtagtcctccgtcaataatttcgtt |
315 |
Q |
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| T |
13587262 |
attacctggttctagtcctcggtcaataatttcgtt |
13587227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 6783236 - 6783362
Alignment:
| Q |
185 |
tcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgacattat |
284 |
Q |
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| T |
6783236 |
tcattcccttggaagacatttcatcatagta-tataattgctatctccttttgccttccgtttaacaagccccaaattagagcagtgtatgttactctat |
6783334 |
T |
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| Q |
285 |
ccggttgtagtcctccgtcaataatttc |
312 |
Q |
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| T |
6783335 |
ctggttttagtccttggtcaataatttc |
6783362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 333
Target Start/End: Complemental strand, 41628112 - 41627960
Alignment:
| Q |
180 |
tggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgac |
279 |
Q |
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|||| ||||||||||||||||||||||||| ||||| | |||| ||| ||| || ||| | |||||||| ||| |||| || |||||||||||| || |
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| T |
41628112 |
tggtgtcattcccttggaagacatttcattatacaa-tgtaactgctatctctgagttcccactgtttaacaagcccgaaaataaagcagtgtatgttac |
41628014 |
T |
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| Q |
280 |
attatccggttgtagtcctccgtcaataatttcgttgaagagtctgattgcatc |
333 |
Q |
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|||||| |||| |||||||| | |||| ||| ||||||||||| |||||||| |
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| T |
41628013 |
attatctggttctagtcctcttttcataacttcattgaagagtctaattgcatc |
41627960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 330
Target Start/End: Complemental strand, 51283868 - 51283720
Alignment:
| Q |
180 |
tggtttcattcccttggaagacatttcattgtacaaatataaccgctttcttcatgtgccctccgtttaacaggccagaaactagagcagtgtatgtgac |
279 |
Q |
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|||| ||||||||||||||||||||||||| ||||| | |||| || ||| |||||| | |||||||| ||| |||| || |||||||||||| || |
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| T |
51283868 |
tggtgtcattcccttggaagacatttcattatacaa-tgtaacttctatctctgggtgcccactgtttaacaagcccgaaaataaagcagtgtatgttac |
51283770 |
T |
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| Q |
280 |
attatccggttgtagtcctccgtcaataatttcgttgaagagtctgattgc |
330 |
Q |
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| T |
51283769 |
attatctggttctagtcctctgttaataactt-attgaagagtctaattgc |
51283720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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