View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1136_high_6 (Length: 255)
Name: NF1136_high_6
Description: NF1136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1136_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 40672287 - 40672146
Alignment:
| Q |
81 |
tacacgtattagaagattgaatgtggtcttgggtgaaggaaggaccttggggtgttcaacatagatgtcttaccaaggtggcattgacggttattatctg |
180 |
Q |
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| T |
40672287 |
tacacgtattagaagattgaatgtggtcttgggtgaagga----ccttggggtgttcaacatagatgtcttaccaaggtggcagtgacggttattatctg |
40672192 |
T |
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| Q |
181 |
aggaggattagcaatggtcaaaatgttgagtgctatgtatggttcg |
226 |
Q |
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| T |
40672191 |
aggagaattggcaatggtcaaaatgttgagtgctatgaatggttcg |
40672146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 40665512 - 40665441
Alignment:
| Q |
155 |
aaggtggcattgacggttattatctgaggaggattagcaatggtcaaaatgttgagtgctatgtatggttcg |
226 |
Q |
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| T |
40665512 |
aaggtggcagtgacggttattatccaaggaggattggcaatggtcaaaatgttgagtgctatgtatggttcg |
40665441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 40672364 - 40672325
Alignment:
| Q |
4 |
agacgtccatgacattgaataagggttaacatttcagtac |
43 |
Q |
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| T |
40672364 |
agacgtccatgacattgaataagggttaacatttcagtac |
40672325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 40682573 - 40682541
Alignment:
| Q |
81 |
tacacgtattagaagattgaatgtggtcttggg |
113 |
Q |
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| T |
40682573 |
tacacatattagaagattgaatgtggtcttggg |
40682541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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