View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1136_low_1 (Length: 549)
Name: NF1136_low_1
Description: NF1136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1136_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 11298020 - 11298409
Alignment:
| Q |
9 |
gaagaaaataaggttacacatgacatttgattataaagaaatattagtgatgaacaaaacaacacatatataaatggttaatatatcaaagatttagtta |
108 |
Q |
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| T |
11298020 |
gaagaacataaggttccacatgacatttgat-------aaatattagtgatgaagaaaacaacacatatataaatggttaatatatcaaagatttagtta |
11298112 |
T |
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| Q |
109 |
acactaatattattttt-ctaactcaggctacaacatcggatggcttcatcctcagcatccagagattgccggcagggcggtccgatgagaaagcaaaca |
207 |
Q |
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| T |
11298113 |
acactaatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccggcagggcggtccggtgagaaagcaaaca |
11298212 |
T |
|
| Q |
208 |
agccacctgtggtaatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattatacactcgtctcacaattgacttgat |
307 |
Q |
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| T |
11298213 |
agccacctgtgctaatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattatacactcgtctcacaattgacttgat |
11298312 |
T |
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| Q |
308 |
gaataaatgaaagagaacgattattttacatatttactctttttattcattactatactgtannnnnnnnnctttctaaataattaactgtgttttt |
404 |
Q |
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| T |
11298313 |
gaataaatgaaagagaacgattattttacatatttactctttttattcattactatactgtatttttttttctatctaaataattaactgtgttttt |
11298409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 100 - 282
Target Start/End: Original strand, 11292757 - 11292940
Alignment:
| Q |
100 |
atttagttaacactaatattattttt-ctaactcaggctacaacatcggatggcttcatcctcagcatccagagattgccggcagggcggtccgatgaga |
198 |
Q |
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| T |
11292757 |
atttagttaacaataatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccggcaggacagtccggtaaga |
11292856 |
T |
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| Q |
199 |
aagcaaacaagccacctgtggtaatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattat |
282 |
Q |
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| T |
11292857 |
aagcaaacaagccaccagtgctaatacatcatggtctcttttgtgtaagttttgttgcttaagatacaaattaatataaattat |
11292940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 11298883 - 11298937
Alignment:
| Q |
400 |
tttttattataataaaaacaaaaacaaagttggatataataatttgagaacgatg |
454 |
Q |
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| T |
11298883 |
tttttattataataaaaacaaaaacaaagttggatataataatttgagaacgatg |
11298937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 30909831 - 30909973
Alignment:
| Q |
98 |
agatttagttaacactaatattattttt-ctaactcaggctacaacatcggatggcttcatcctcagcatccagagattgccggcagggcggtccgatga |
196 |
Q |
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| T |
30909831 |
agatttagttaacacgaatattatttttactgactcaggttacaacatcagatggcttcatcttgagtattcaaagattgccgacaaggcggtccggtga |
30909930 |
T |
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| Q |
197 |
gaaagcaaacaagccacctgtggtaatacatcatggtctcttt |
239 |
Q |
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| T |
30909931 |
gaaagcaaacaagccaacagtgttgatacaacatggtctcttt |
30909973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 30903939 - 30904035
Alignment:
| Q |
170 |
gagattgccggcagggcggtccgatgagaaagcaaacaagccacctgtggtaatacatcatggtctcttttctgtaagttttgttgatgctgataca |
266 |
Q |
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| T |
30903939 |
gagattgtcggcagggcggtccagcgagaaagcaaacaagccacccgtgctaatacaacatggtctcttttgtgtaagttttgttgttgcagataca |
30904035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 36706039 - 36705967
Alignment:
| Q |
181 |
cagggcggtccgatgagaaagcaaacaagccacctgtggtaatacatcatggtctcttttctgtaagttttgt |
253 |
Q |
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| T |
36706039 |
cagggcggtccgataagaaagcggacaagccacctgtgttaatccaacatggtctcttttgtgtaagttttgt |
36705967 |
T |
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