View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1136_low_13 (Length: 270)
Name: NF1136_low_13
Description: NF1136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1136_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 1264342 - 1264193
Alignment:
| Q |
57 |
actgagttggccaaattgaacaaagatgtcctcaaagattctatttgcgctctatttgttagaatctcccccatcaatgccggatcgacttgctccaagt |
156 |
Q |
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| T |
1264342 |
actgagttggccaaattgaacaaagatgtcctcaaagattctatttg-----------ttagaatctcccccatcaatgccggatcgacttgctccaagt |
1264254 |
T |
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| Q |
157 |
catctgtaatgggcgaggagaagcatcgactttgccttaaatccttcatgttatgcataat |
217 |
Q |
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| T |
1264253 |
catctgtaatgggcgaggagaagcatcgactttgcctcaaatccttcatgttatgcataat |
1264193 |
T |
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