View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1136_low_17 (Length: 251)
Name: NF1136_low_17
Description: NF1136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1136_low_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 11386823 - 11386582
Alignment:
| Q |
9 |
atcataggattggatgcagaaatgcagttgaacttggacccttggcagctacactcatgaaaatgcttcgtttaagctattgcggcgttgatgaacttgc |
108 |
Q |
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| T |
11386823 |
atcatgggattggatgcagaaatgcagttgaacttggacccttggcagctacagtcatgaaaaagcttcgtttaagctattgcggcattgatgaacttgc |
11386724 |
T |
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| Q |
109 |
atttgtggtcaataaacttgatcttcgaaagtacaggccttctgaccttgattttgattggaaatttatttgcagtaatgaagaacttgctagacttgct |
208 |
Q |
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| T |
11386723 |
atttgtggtcaataa-cttgatcttcgaaagtacaggccttctgaccttgattttgattggaaatttatttgcagtaatgaagaacttgctagacttgct |
11386625 |
T |
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| Q |
209 |
actgttaatgtttactcttatcacaaaattggtagcacgttgc |
251 |
Q |
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| T |
11386624 |
actgttaatgtttactcttatcacaaaattggtagcacgttgc |
11386582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 11392812 - 11392570
Alignment:
| Q |
9 |
atcataggattggatgcagaaatgcagttgaacttggacccttggcagctacactcatgaaaatgcttcgtttaagctattgcggcgttgatgaacttgc |
108 |
Q |
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| T |
11392812 |
atcatgggattggaagcagaaatgcagttgaacttggaccattggctgctaaacttatgaaaatgcctcgtttaagctattgcggcgttgatgaacttgc |
11392713 |
T |
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| Q |
109 |
atttgtggtcaataaacttgatcttcgaaagtacaggccttctgaccttgattttgattggaaatttatttgcagtaatgaagaacttgctagacttgct |
208 |
Q |
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| T |
11392712 |
atttgtggtcaataaacttgatcttcgcaagtaccggccttctgaccttgattttgattggcaatttatttgcagtgatgaagaacttgctagacttgct |
11392613 |
T |
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| Q |
209 |
actgttaatgtttactcttatcacaaaattggtagcacgttgc |
251 |
Q |
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| T |
11392612 |
actgttaatgtttattcttatcacaaaattggtagcacgttgc |
11392570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 17198334 - 17198194
Alignment:
| Q |
9 |
atcataggattggatgcagaaatgcagttgaacttggacccttggcagctacactcatgaaaatgcttcgtttaagctattgcggcgttgatgaacttgc |
108 |
Q |
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| T |
17198334 |
atcatgggattggatgcagaaatgcagttgaacttggaaccctagctgccactctcatgaatgcgcctcatttaagtttttgtggcgttgatgaacttgc |
17198235 |
T |
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| Q |
109 |
atttgtggtcaataaacttgatcttcgaaagtacaggcctt |
149 |
Q |
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| T |
17198234 |
atttgtggtcgataaacttgatcttcgtaagtataggcctt |
17198194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 17198155 - 17198103
Alignment:
| Q |
188 |
gaagaacttgctagacttgctactgttaatgtttactcttatcacaaaattgg |
240 |
Q |
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| T |
17198155 |
gaagaacttgctaaacttgctactgttaatgtttactcttatcataagattgg |
17198103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 38820826 - 38820943
Alignment:
| Q |
21 |
gatgcagaaatgcagttgaacttggacccttggcagctacactcatgaaaatgcttcgtttaagctattgcggcgttgatgaacttgcatttgtggtcaa |
120 |
Q |
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| T |
38820826 |
gatgcagaaatgctgtggaacttggacccttggctgctagtgttaggaagatgcctagtttgagtttttgcggcgttgatgaacttgctgttgctgtcaa |
38820925 |
T |
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| Q |
121 |
taaacttgatcttcgaaa |
138 |
Q |
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| T |
38820926 |
taagcttgatcttcgaaa |
38820943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 38818768 - 38818808
Alignment:
| Q |
189 |
aagaacttgctagacttgctactgttaatgtttactcttat |
229 |
Q |
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| T |
38818768 |
aagaacttgctaaacttgctactgttaatgtttactcttat |
38818808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 38814362 - 38814418
Alignment:
| Q |
189 |
aagaacttgctagacttgctactgttaatgtttactcttatcacaaaattggtagca |
245 |
Q |
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| T |
38814362 |
aagaacttgccaaacttgctactgttaatgtttattcttattacaagattgggagca |
38814418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 38831395 - 38831431
Alignment:
| Q |
192 |
aacttgctagacttgctactgttaatgtttactctta |
228 |
Q |
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| T |
38831395 |
aacttgctaaacttgctactattaatgtttactctta |
38831431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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