View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1136_low_3 (Length: 379)
Name: NF1136_low_3
Description: NF1136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1136_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 123 - 376
Target Start/End: Complemental strand, 25618992 - 25618739
Alignment:
| Q |
123 |
cttcattacaaaggtagctcattccataggattatacctagctttatgataagcatgtactttatgtcaagttagttctgtttttatgatattcagaaga |
222 |
Q |
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| T |
25618992 |
cttcattacaaaggtagctcattccataggattatacctagctttatgataagcatgtactttatgtcaagttagttctgtttttatgatattcagaaga |
25618893 |
T |
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| Q |
223 |
tggaatttccccttgatgcaaagagcgaaatggcatttgttaacatgaaattcgtggaaggaaatccaagtgaacatggtagttgagtatattcagcagc |
322 |
Q |
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| T |
25618892 |
tggaatttccccttaatgcaaagagcgaaatggcatttgttaacatgaaattcgtagaaggaaatccaagtgaacatggtagttgagtatattcagcagc |
25618793 |
T |
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| Q |
323 |
actaaatgtggagtgtgttgagcttaaaataacattgacactgcttcaatagtt |
376 |
Q |
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| T |
25618792 |
actaaatgtggagtgtgttgagcttaaaataatattgacactgcttcaatagtt |
25618739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 379
Target Start/End: Complemental strand, 25640704 - 25640572
Alignment:
| Q |
250 |
aaatggcatttgttaacatgaaattcgtggaaggaaatccaagtgaacatggtagttgagtatattcagcagcacta-aatgtg--gagtgtgttgagct |
346 |
Q |
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| T |
25640704 |
aaatggcatttgttaacatgaaatttgtagaaggaaatccaagcgaacatggctgttgagtatattaagcagcacactaatgtgttgagtatgttgaact |
25640605 |
T |
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| Q |
347 |
taaaataacattgacactgcttcaatagttcaa |
379 |
Q |
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| T |
25640604 |
taaaatgacattgacactgcttcaatagttcaa |
25640572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 25642761 - 25642712
Alignment:
| Q |
123 |
cttcattacaaaggtagctcattccataggattatacctagctttatgat |
172 |
Q |
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| T |
25642761 |
cttcattacaaaggtagctcattccataggatcatccctagctttatgat |
25642712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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