View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1136_low_6 (Length: 320)
Name: NF1136_low_6
Description: NF1136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1136_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 97 - 320
Target Start/End: Original strand, 1631786 - 1632009
Alignment:
| Q |
97 |
aggaagctacttgcagaatctttaaacatgaacaggaccagaattctagctttcaagaacaagccacctactccagttgattcgattcctcatgatctta |
196 |
Q |
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| T |
1631786 |
aggaagctacttgcagaatctttaaacatgaacaggaccagaattctagctttcaagaacaagccacctactccagttgattcgattcctcatgaactta |
1631885 |
T |
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| Q |
197 |
catcatcatctcttcaacaagataaaaccataaagcccaggcgaattattcctcaggtacattactgaaatctgattgatattgcttatattttatcatt |
296 |
Q |
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| T |
1631886 |
cttcatcatctcttcaagaagataaaaccataaagcccaggcgaattattcctcaggtacattactgaaatctgattgatattgcttatattttatcatt |
1631985 |
T |
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| Q |
297 |
gttactctggttcttttgttgcat |
320 |
Q |
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| T |
1631986 |
gttactctggttcttctgttgcat |
1632009 |
T |
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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 254
Target Start/End: Original strand, 20455711 - 20455875
Alignment:
| Q |
96 |
caggaagctacttgcagaatctttaaacatgaacaggaccagaattctagctttcaagaacaagccaccta---ctccagttgattcgattcctcat--g |
190 |
Q |
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| T |
20455711 |
caggaagctacttggagaagctttaaacatgaacaggaccagaattctagcttttaagaacaagccacctacgccgccagttgatttcttctctcatgag |
20455810 |
T |
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| Q |
191 |
atc-ttacatcatcatctcttcaacaagataaaaccataaagcccaggcgaattattcctcaggt |
254 |
Q |
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| T |
20455811 |
atcattacttcatcaactcttcgacaagataaaaccatcaagccccggcgagttattcctcaggt |
20455875 |
T |
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