View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11370_low_1 (Length: 491)
Name: NF11370_low_1
Description: NF11370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11370_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 64 - 482
Target Start/End: Complemental strand, 48533500 - 48533050
Alignment:
| Q |
64 |
accttcattattctgatcgcaatgtgacaattgcggtatcttctttagcaatttgctt---------------------ctttagcctcgcaagagacct |
142 |
Q |
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| T |
48533500 |
acctacattattctgatcgcaatgtgacaattgcggtatattctttagcaatttgcttctttgcaagtggcgccttcttctttagcctcgcaagagacct |
48533401 |
T |
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| Q |
143 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48533400 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
48533301 |
T |
|
| Q |
243 |
tcttacatcatcaactccgcagca----ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatg-ttttg |
337 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48533300 |
tctta---catcaactccgcagcaccagccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatgtttttg |
48533204 |
T |
|
| Q |
338 |
ttattgttggtttagttcatgg---------aacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatgt |
428 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48533203 |
ttattgttggtttggttcatggaacaaacaaaacaaacttaattcatttctatttgatatttttctcaattcatttctattggagaaatccatcttatat |
48533104 |
T |
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| Q |
429 |
attaaatgcaattcacggggctttggcatcaactcaatcaaacttttgtctctg |
482 |
Q |
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| T |
48533103 |
attaaatgcaattcacggggctttggcatcaactcaatcaaacttttgtttctg |
48533050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 48533583 - 48533527
Alignment:
| Q |
10 |
ttcatttcatttcagggcttacgtcgattactactttgttgcggttattacggcacc |
66 |
Q |
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| T |
48533583 |
ttcatttcatttcagggcttacgtcgattactactttgttgcggttattatggcacc |
48533527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 48536336 - 48536225
Alignment:
| Q |
139 |
acctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgt |
238 |
Q |
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|||||||||||| ||||||||||||||||| || ||||| ||| || | ||||||| | |||||||||||||||||||||||| |||||||||| ||| |
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| T |
48536336 |
acctctctcacatagatcagatcaacactcgtagattccgggtcctcaggctattggg-tatcttacatctctatgtggcttatgtttattattcactgt |
48536238 |
T |
|
| Q |
239 |
ggtatcttacatc |
251 |
Q |
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|||| |||||||| |
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| T |
48536237 |
ggtaacttacatc |
48536225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 366
Target Start/End: Complemental strand, 48536193 - 48536082
Alignment:
| Q |
262 |
cagcaccagcctagcctagttctgttgtt-----gttcttt-----aggctgtttctaaaagcattctagtatagtatatgttttgttattgttggttta |
351 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| || |
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| T |
48536193 |
cagcaccagcctagcctagttctgttgttacgttgttctttggtttaggctgtttataaaagcattccagtatag--tatgtcttgttattgttgg-ttg |
48536097 |
T |
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| Q |
352 |
gttcatggaacaaac |
366 |
Q |
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||||||||||||||| |
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| T |
48536096 |
gttcatggaacaaac |
48536082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 48535940 - 48535899
Alignment:
| Q |
432 |
aaatgcaattcacggggctttggcatcaactcaatcaaactt |
473 |
Q |
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| T |
48535940 |
aaatgcaattcacggggcttgggcatcgactcaataaaactt |
48535899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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