View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11370_low_3 (Length: 437)
Name: NF11370_low_3
Description: NF11370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11370_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 179 - 413
Target Start/End: Complemental strand, 12515066 - 12514832
Alignment:
| Q |
179 |
ccttggcaactttgtgagaggcttccttagggaaaagataagccaagccaataacattgatcaactttccaaagaaagtaaagaaaataggaacagaagc |
278 |
Q |
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| T |
12515066 |
ccttggcaactttgtgagaggcttccttagggaaaagataagccaagccaataacattgatcaactttccaaagaaaataaagaaaataggaacagaagc |
12514967 |
T |
|
| Q |
279 |
accatgaacaatggctccaatagatccaataaacattaagacataatcataagagtcagcaaaagaaaatagctttaacatagaaactttgtgttcnnnn |
378 |
Q |
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| T |
12514966 |
accatgaacaatggctccaatagatccaataaacattaagacataatcataagagtcagcaaaagaaaatagctttaacatagaaactttgtgttctttt |
12514867 |
T |
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| Q |
379 |
nnnctctcatcaccttctttagattccatttgact |
413 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
12514866 |
tttctctcatcaccttctttggattccatttgact |
12514832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 12515232 - 12515140
Alignment:
| Q |
13 |
attgtatttttgttagttccattaaatcgaaacaattttgaatggaacaattcttgatcagactatcgactgaactctgtattacagaccatc |
105 |
Q |
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| T |
12515232 |
attgtatttttgttagttccattaaatcgaaacaattctgaatggaacaatttttgatcagactatcgactgaactctgtattaaagaccatc |
12515140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 27718158 - 27718051
Alignment:
| Q |
179 |
ccttggcaactttgtgagaggcttccttagggaaaagataagccaagccaataacattgatcaactttccaaagaaagtaaagaaaataggaacagaagc |
278 |
Q |
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|||||||||||| ||| || ||||| ||||| ||||| |||||||| || | ||||| || | || |||||||| ||||||||| ||||||||| || |
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| T |
27718158 |
ccttggcaacttggtgggaagcttctttaggaaaaaggtaagccaaacctacgacattaataattttcccaaagaagataaagaaaacaggaacagatgc |
27718059 |
T |
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| Q |
279 |
accatgaa |
286 |
Q |
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|||||||| |
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| T |
27718058 |
accatgaa |
27718051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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