View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11370_low_4 (Length: 337)

Name: NF11370_low_4
Description: NF11370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11370_low_4
NF11370_low_4
[»] chr3 (11 HSPs)
chr3 (1-323)||(48536593-48536919)
chr3 (237-323)||(51899386-51899472)
chr3 (230-323)||(16932867-16932960)
chr3 (230-323)||(12723360-12723453)
chr3 (55-136)||(48533671-48533752)
chr3 (232-313)||(25737615-25737696)
chr3 (237-313)||(30468639-30468715)
chr3 (237-295)||(31637702-31637760)
chr3 (237-293)||(6999442-6999498)
chr3 (1-41)||(48533632-48533672)
chr3 (237-295)||(25177952-25178010)
[»] chr7 (2 HSPs)
chr7 (234-323)||(48207595-48207684)
chr7 (237-313)||(5045577-5045653)
[»] chr4 (4 HSPs)
chr4 (234-323)||(48255058-48255147)
chr4 (240-318)||(36480759-36480837)
chr4 (237-313)||(36220727-36220803)
chr4 (237-295)||(6682879-6682937)
[»] chr1 (5 HSPs)
chr1 (233-323)||(14585926-14586016)
chr1 (240-318)||(33737458-33737536)
chr1 (237-313)||(45274243-45274319)
chr1 (237-295)||(35322452-35322510)
chr1 (239-267)||(3215179-3215207)
[»] chr6 (3 HSPs)
chr6 (237-323)||(330276-330362)
chr6 (233-293)||(6816241-6816301)
chr6 (237-295)||(13997160-13997218)
[»] scaffold0570 (1 HSPs)
scaffold0570 (240-318)||(4839-4917)
[»] scaffold0479 (1 HSPs)
scaffold0479 (230-323)||(10892-10985)
[»] chr2 (4 HSPs)
chr2 (238-312)||(39648358-39648432)
chr2 (237-313)||(12997356-12997432)
chr2 (237-313)||(26423323-26423399)
chr2 (239-267)||(14150242-14150270)
[»] chr8 (1 HSPs)
chr8 (237-313)||(17904654-17904730)
[»] chr5 (5 HSPs)
chr5 (238-313)||(22697557-22697632)
chr5 (237-313)||(31089531-31089607)
chr5 (237-295)||(33304933-33304991)
chr5 (232-267)||(20864142-20864177)
chr5 (237-313)||(24442670-24442746)
[»] scaffold0233 (1 HSPs)
scaffold0233 (237-295)||(19250-19308)
[»] scaffold1476 (1 HSPs)
scaffold1476 (237-313)||(1238-1314)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 48536593 - 48536919
Alignment:
Q  1 aatgcaaaaaacaaactcactcattctagatccgtcgactctagagtaggcttatcctcaacatcgatgctcggcgcttttgtcgaatctgcagcgacaa 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48536593 aatgcaaaaaacaaactcactcactctagatccgccgactctagagtaggcttatcctcaacatcgatgctcggcgctttcgtcgaatctgcagcgacaa 48536692  T
Q  101 cgatcaccggatccgccaactctacagtaaacttgtgttcaactttgatattgatagtcagcgctgagccaccc------cctgcagcttgggacgcaga 194  Q
    || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  48536693 cggtcaccagatccgccaactctaccgtaaacttgtgttcaactttgatattgatagtcagcgctgagccaccccctgttcctgcagcttgggacgcaga 48536792  T
Q  195 cattgtttggtttgtgatcnnnnnnnnnnnnnnnnagaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagat 294  Q
    ||||||||||||| |||||                |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48536793 cattgtttggtttatgatc--ttttttatttttttagaaaaggaagcttatagcttttcattattaatcaaagaagttatacaataagggatattaagat 48536890  T
Q  295 gcaattggaaactagcatgtgataatgct 323  Q
    |||||||||||||||||||||||||||||    
T  48536891 gcaattggaaactagcatgtgataatgct 48536919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 51899386 - 51899472
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||    
T  51899386 gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgct 51899472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 16932867 - 16932960
Alignment:
Q  230 agaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| ||  | |||||||||||||||||||||||||    
T  16932867 agaaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgtggaatattaaaatatagttggaaactagcatgtgataatgct 16932960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 12723360 - 12723453
Alignment:
Q  230 agaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||  || ||||||| ||  ||||||||| |||||||||||||||||    
T  12723360 agaaaaggaagtttatagcttttcattattaatcaaagtagttatacaatatggaatattaaaatataattggaaattagcatgtgataatgct 12723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 48533671 - 48533752
Alignment:
Q  55 tcctcaacatcgatgctcggcgcttttgtcgaatctgcagcgacaacgatcaccggatccgccaactctacagtaaacttgt 136  Q
    ||||| |||| ||||||||||||||  |||||||||||||||||| || || ||||||| | |||||||| |||||||||||    
T  48533671 tcctcgacattgatgctcggcgcttccgtcgaatctgcagcgacagcggtcgccggatctggcaactctagagtaaacttgt 48533752  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 25737696 - 25737615
Alignment:
Q  232 aaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||| ||||||||||| ||||||||||||||||||| |   |||||||| || || |||||||| ||||||||| |||||||    
T  25737696 aaaaagaagcttatagtttttcattattaatcaaagcatgaatacaatgtggaatgttaagatgaaattggaaattagcatg 25737615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 30468639 - 30468715
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||||||||||||||||||||||||| |||| |   |||||||| || |||||||||||  | ||||||||||||||    
T  30468639 gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatg 30468715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 31637760 - 31637702
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg 295  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| || || ||||||||    
T  31637760 gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatg 31637702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 6999442 - 6999498
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaaga 293  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| || || ||||||    
T  6999442 gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaaga 6999498  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48533632 - 48533672
Alignment:
Q  1 aatgcaaaaaacaaactcactcattctagatccgtcgactc 41  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  48533632 aatgcaaaaaacaaactcactcactctagatccgccgactc 48533672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 25178010 - 25177952
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg 295  Q
    ||||||||||||||||||||||| ||||||| ||  |||||||| || || ||||||||    
T  25178010 gaagcttatagcttttcattattgatcaaagtagaaatacaatgtggaatgttaagatg 25177952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 48207684 - 48207595
Alignment:
Q  234 aaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||    
T  48207684 aaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgct 48207595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 5045653 - 5045577
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||||||||| |||||||||||||||||||| |   |||||||| || |||||||||||  | ||||||||||||||    
T  5045653 gaagcttataacttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatg 5045577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 48255147 - 48255058
Alignment:
Q  234 aaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||    
T  48255147 aaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgct 48255058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 36480759 - 36480837
Alignment:
Q  240 gcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgata 318  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  36480759 gcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgata 36480837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 36220727 - 36220803
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    ||||||||||||||||||||||||||||||| |   |||||||| || |||||||||||  | ||||||||||||||    
T  36220727 gaagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatg 36220803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 6682937 - 6682879
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg 295  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| || || ||||||||    
T  6682937 gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatg 6682879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 14586016 - 14585926
Alignment:
Q  233 aaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||  |||||||||||||||||||||||||||    
T  14586016 aaaggaagcttatagcttttcattattaatcaaactagttatacaatgtggaatattaagatataattggaaactagcatgtgataatgct 14585926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 33737458 - 33737536
Alignment:
Q  240 gcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgata 318  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  33737458 gcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgata 33737536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 45274243 - 45274319
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||||||||||||||||||||||||| |||| |   |||||||| || |||||||||||  | ||||||||||||||    
T  45274243 gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatg 45274319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 35322510 - 35322452
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg 295  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| || || ||||||||    
T  35322510 gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatg 35322452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 3215207 - 3215179
Alignment:
Q  239 agcttatagcttttcattattaatcaaag 267  Q
    |||||||||||||||||||||||||||||    
T  3215207 agcttatagcttttcattattaatcaaag 3215179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 237 - 323
Target Start/End: Complemental strand, 330362 - 330276
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||    
T  330362 gaagcttatagtttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgct 330276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 6816241 - 6816301
Alignment:
Q  233 aaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaaga 293  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||    
T  6816241 aaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaaga 6816301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 13997160 - 13997218
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg 295  Q
    ||||||||||||||||||||||| |||||||||   |||||||| || || ||||||||    
T  13997160 gaagcttatagcttttcattattgatcaaagaataaatacaatgtggaatgttaagatg 13997218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 4839 - 4917
Alignment:
Q  240 gcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgata 318  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  4839 gcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgata 4917  T

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Target: scaffold0479 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 10985 - 10892
Alignment:
Q  230 agaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgct 323  Q
    ||||||||||  |||| ||||||||||||||||||||| |||||||||||| || ||||||| ||  |||||||||||||||||||||||||||    
T  10985 agaaaaggaattttattgcttttcattattaatcaaagtagttatacaatgtggaatattaaaatataattggaaactagcatgtgataatgct 10892  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 39648432 - 39648358
Alignment:
Q  238 aagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcat 312  Q
    |||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| | | |||||||||||    
T  39648432 aagcttatagcttttctttattaatcaaagaagttatacaatgtagaatattaagatgctactcgaaactagcat 39648358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 12997432 - 12997356
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||||||||||||||||||||||||| |||| |   |||||||| || |||||||||||  | ||||||||||||||    
T  12997432 gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatg 12997356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 26423399 - 26423323
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    ||||||||||||||||||||||||||||||| |   |||||| | || |||||||||||  | ||||||||||||||    
T  26423399 gaagcttatagcttttcattattaatcaaagtatgaatacaacgtggaatattaagatgataatggaaactagcatg 26423323  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 14150242 - 14150270
Alignment:
Q  239 agcttatagcttttcattattaatcaaag 267  Q
    |||||||||||||||||||||||||||||    
T  14150242 agcttatagcttttcattattaatcaaag 14150270  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 17904654 - 17904730
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    ||||||||||||||||||||||||||||||| |  ||||||||| || |||||| ||||  | ||||||||||||||    
T  17904654 gaagcttatagcttttcattattaatcaaagtatgtatacaatgtggaatattaggatgataatggaaactagcatg 17904730  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 22697557 - 22697632
Alignment:
Q  238 aagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||||||||||||||||||||||||||||| |   |||||||| || |||||||||||  | ||||||||||||||    
T  22697557 aagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatg 22697632  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 31089607 - 31089531
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||||||||||||||||||||||||| |||| |   |||||||| || |||||||||||  | ||||||||||||||    
T  31089607 gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatg 31089531  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 33304933 - 33304991
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg 295  Q
    ||||||||||||||||||||||| ||||||||||  |||||||| || || ||||||||    
T  33304933 gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatg 33304991  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 20864177 - 20864142
Alignment:
Q  232 aaaaggaagcttatagcttttcattattaatcaaag 267  Q
    |||| |||||||||||||||||||||||||||||||    
T  20864177 aaaaagaagcttatagcttttcattattaatcaaag 20864142  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 24442746 - 24442670
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    ||||||||||| |||| |||||||||||||| |   ||||||||  | |||||||||||  | ||||||||||||||    
T  24442746 gaagcttatagtttttaattattaatcaaagtatgaatacaatgtagaatattaagatgataatggaaactagcatg 24442670  T

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Target: scaffold0233 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 19250 - 19308
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg 295  Q
    ||||||||||||||||||||||| ||||||| ||  |||||||| || |||||||||||    
T  19250 gaagcttatagcttttcattattgatcaaagtaggaatacaatgtggaatattaagatg 19308  T

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Target: scaffold1476 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 1238 - 1314
Alignment:
Q  237 gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatg 313  Q
    |||| |||||||||||||||||||||||||| ||  |||||||| || || ||| |||| | ||||| |||||||||    
T  1238 gaagtttatagcttttcattattaatcaaagtagaaatacaatgtggaatgttacgatgaatttggagactagcatg 1314  T

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