View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11371_high_1 (Length: 520)

Name: NF11371_high_1
Description: NF11371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11371_high_1
NF11371_high_1
[»] chr1 (4 HSPs)
chr1 (18-86)||(43583786-43583854)
chr1 (87-177)||(5900148-5900238)
chr1 (91-127)||(46315411-46315447)
chr1 (90-177)||(44289342-44289429)
[»] chr7 (3 HSPs)
chr7 (88-176)||(7744400-7744488)
chr7 (87-126)||(45638351-45638390)
chr7 (90-127)||(45639106-45639143)
[»] chr8 (3 HSPs)
chr8 (85-177)||(31882640-31882732)
chr8 (88-128)||(37810321-37810361)
chr8 (87-128)||(37811078-37811119)
[»] chr5 (2 HSPs)
chr5 (88-177)||(2358561-2358650)
chr5 (87-139)||(31659047-31659099)
[»] chr4 (1 HSPs)
chr4 (92-177)||(30057815-30057900)
[»] chr3 (5 HSPs)
chr3 (87-139)||(16254283-16254333)
chr3 (91-127)||(16253552-16253588)
chr3 (88-128)||(23709531-23709571)
chr3 (88-128)||(23727987-23728027)
chr3 (88-128)||(23746443-23746483)
[»] scaffold0059 (1 HSPs)
scaffold0059 (87-139)||(8927-8979)
[»] scaffold0013 (1 HSPs)
scaffold0013 (87-139)||(236419-236471)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 43583854 - 43583786
Alignment:
Q  18 ctttgatcaaatcccatcactccgcattctcccaaatctggacagctttgttacatccactaataggtg 86  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  43583854 ctttgatcaaatcccatcactctgcattctcccaaatctggacagctttgttacacccactaataggtg 43583786  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 5900238 - 5900148
Alignment:
Q  87 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 177  Q
    |||||||||||||||||||||| || ||||||||||||||||  ||||||||||  | ||||  |||||||||||| |||| |||||||||    
T  5900238 gggggcatatcacatgagaatgatagttatatgtgagaatgataagaataaatacaagccactagattaaaaagaaaggctaagattaaaa 5900148  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 46315447 - 46315411
Alignment:
Q  91 gcatatcacatgagaatgctatttatatgtgagaatg 127  Q
    |||||||||||||||||| ||||||||||||||||||    
T  46315447 gcatatcacatgagaatgatatttatatgtgagaatg 46315411  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 44289342 - 44289429
Alignment:
Q  90 ggcatatcacatgagaatgc-tatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 177  Q
    |||||||||||||||||||  ||| | ||||||||||||| |||||||||| | | ||  | ||||||||| ||||| |||||||||||    
T  44289342 ggcatatcacatgagaatgggtatct-tatgtgagaatgatgagaataaattacagccgtcagattaaaaataatgggtgagattaaaa 44289429  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 7744488 - 7744400
Alignment:
Q  88 ggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaa 176  Q
    ||||||||||||||||||||| || |||||||||||||||| |||||||||||  |||||   ||||||||||||||||| ||||||||    
T  7744488 ggggcatatcacatgagaatggtagttatatgtgagaatgatgagaataaatagaaaccattagattaaaaagaatggcttagattaaa 7744400  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 45638351 - 45638390
Alignment:
Q  87 gggggcatatcacatgagaatgctatttatatgtgagaat 126  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  45638351 gggggcatatcacatgagaatgatatttatatgtgagaat 45638390  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 45639143 - 45639106
Alignment:
Q  90 ggcatatcacatgagaatgctatttatatgtgagaatg 127  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  45639143 ggcatatcacatgaaaatgatatttatatgtgagaatg 45639106  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 31882640 - 31882732
Alignment:
Q  85 tggggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 177  Q
    |||||||||||||||||||||||| || ||||||||||||||||  ||||||||||  ||||||  |||||||||||| |||| || ||||||    
T  31882640 tggggggcatatcacatgagaatgatagttatatgtgagaatgataagaataaatatgaaccactagattaaaaagaagggctaagtttaaaa 31882732  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 37810321 - 37810361
Alignment:
Q  88 ggggcatatcacatgagaatgctatttatatgtgagaatga 128  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  37810321 ggggcatatcacatgagaatgatatttataggtgagaatga 37810361  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 37811119 - 37811078
Alignment:
Q  87 gggggcatatcacatgagaatgctatttatatgtgagaatga 128  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  37811119 gggggcatatcgcatgagaatgatatttataggtgagaatga 37811078  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 2358561 - 2358650
Alignment:
Q  88 ggggcatatcacatgagaatgc-tatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 177  Q
    |||||||||||||||||||||  ||| | ||||||||||||| |||||||||| | | ||| | ||||||||  ||||| |||||||||||    
T  2358561 ggggcatatcacatgagaatggatatct-tatgtgagaatgatgagaataaattacacccatcagattaaaagcaatggatgagattaaaa 2358650  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 31659099 - 31659047
Alignment:
Q  87 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 139  Q
    |||| |||||||||||||||||  |||| ||||||||||||  ||||||||||    
T  31659099 ggggacatatcacatgagaatgacatttgtatgtgagaatggtgagaataaat 31659047  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 30057900 - 30057815
Alignment:
Q  92 catatcacatgagaatgctatttatatgtgagaatgaagagaataaataataaccaccggattaaaaagaatggctgagattaaaa 177  Q
    |||||||||||||||||  | ||||||||||||||||  ||||||||||  | |||   ||||||||   ||||||||||||||||    
T  30057900 catatcacatgagaatgacaattatatgtgagaatgataagaataaataggagccattagattaaaatacatggctgagattaaaa 30057815  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 16254333 - 16254283
Alignment:
Q  87 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 139  Q
    |||||||||||||||||||||| ||||  |||||||||||||  |||||||||    
T  16254333 gggggcatatcacatgagaatgatatt--tatgtgagaatgataagaataaat 16254283  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 16253552 - 16253588
Alignment:
Q  91 gcatatcacatgagaatgctatttatatgtgagaatg 127  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  16253552 gcatatcacatgagaatgatatttatatatgagaatg 16253588  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 23709531 - 23709571
Alignment:
Q  88 ggggcatatcacatgagaatgctatttatatgtgagaatga 128  Q
    ||||||||||||||||||||| || |||||| |||||||||    
T  23709531 ggggcatatcacatgagaatgatagttatatatgagaatga 23709571  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 23727987 - 23728027
Alignment:
Q  88 ggggcatatcacatgagaatgctatttatatgtgagaatga 128  Q
    ||||||||||||||||||||| || |||||| |||||||||    
T  23727987 ggggcatatcacatgagaatgatagttatatatgagaatga 23728027  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 23746443 - 23746483
Alignment:
Q  88 ggggcatatcacatgagaatgctatttatatgtgagaatga 128  Q
    ||||||||||||||||||||| || |||||| |||||||||    
T  23746443 ggggcatatcacatgagaatgatagttatatatgagaatga 23746483  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 8927 - 8979
Alignment:
Q  87 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 139  Q
    ||||||||||||||||||||||   ||| ||||||||||||  ||||||||||    
T  8927 gggggcatatcacatgagaatggcttttgtatgtgagaatggtgagaataaat 8979  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 236471 - 236419
Alignment:
Q  87 gggggcatatcacatgagaatgctatttatatgtgagaatgaagagaataaat 139  Q
    ||||||||||||||||||||||   ||| ||||||||||||  ||||||||||    
T  236471 gggggcatatcacatgagaatggcttttgtatgtgagaatggtgagaataaat 236419  T

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