View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11373_low_1 (Length: 399)
Name: NF11373_low_1
Description: NF11373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11373_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 38943579 - 38943389
Alignment:
| Q |
14 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacgctcca |
113 |
Q |
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| T |
38943579 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacactcca |
38943480 |
T |
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| Q |
114 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttccc |
204 |
Q |
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| T |
38943479 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttccc |
38943389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 38951057 - 38950867
Alignment:
| Q |
14 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacgctcca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38951057 |
cagagacagtcaccaaaaggttaaccgcttcagagagggtgatctcattgcagttcctaccggtactgtattttggatgtacaatgaccaggacactcca |
38950958 |
T |
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| Q |
114 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttccc |
204 |
Q |
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| T |
38950957 |
gtcattgccgtttctcttattgacactggcagcttccaaaatcaacttgatgagatgcctagggtgagcactgagcataatgaaacttccc |
38950867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 242 - 399
Target Start/End: Complemental strand, 38943351 - 38943192
Alignment:
| Q |
242 |
tcaagttttaactctaat-gaaattggcatttgtttgtttttgactgaca-tgcttgacagagattctatcttgctgggaaccaagagcaagagttttta |
339 |
Q |
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| T |
38943351 |
tcaagttttaactctaatagaaattggcatttgtttgtttttgactgacaatgcttgacagagattctatcttgctgggaaccaagagcaagagttttta |
38943252 |
T |
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| Q |
340 |
caatatcagcaacaacaagtgagaggaaggggagaacaaaggagaggaagggaacaacaa |
399 |
Q |
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| T |
38943251 |
caatatcagcaacaacaagtgagaggaaggggagaacaaaggagaggaagggaacaacaa |
38943192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 242 - 399
Target Start/End: Complemental strand, 38950829 - 38950670
Alignment:
| Q |
242 |
tcaagttttaactctaat-gaaattggcatttgtttgtttttgactgaca-tgcttgacagagattctatcttgctgggaaccaagagcaagagttttta |
339 |
Q |
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| T |
38950829 |
tcaagttttaactctaatagaaattggcatttgtttgtttttgactgacaatgcttgacagagattctatcttgctgggaaccaagagcaagagttttta |
38950730 |
T |
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| Q |
340 |
caatatcagcaacaacaagtgagaggaaggggagaacaaaggagaggaagggaacaacaa |
399 |
Q |
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| T |
38950729 |
caatatcagcaacaacaagtgagaggaaggggagaacaaaggagaggaagggaacaacaa |
38950670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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