View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11373_low_3 (Length: 260)
Name: NF11373_low_3
Description: NF11373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11373_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 28295512 - 28295754
Alignment:
| Q |
1 |
tataatgaaggtgatctaccttgagtgttgattataaaagtgtaatgagttgtgaagtcagtgagttttcttgtgtttgaatcccaaagtaacacttttt |
100 |
Q |
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| T |
28295512 |
tataatgaaggtgatctaccttgagtgttgatgacaaaagtgtaatgagttgtgaagtcagtgagttttcctgtgtttgaatcccaaagtaacacttttt |
28295611 |
T |
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| Q |
101 |
ctgaatagaagactcttccaacttgacaagaataattttcattgatgttgaaattaacttctccatcacgaggtgctgcagaaccttggtagactatgtt |
200 |
Q |
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| T |
28295612 |
ctgaatagaagactcttccaacttgacatgaataattttcattgatgttgaaattaacttctccatcacgaggtgctgcagaaccttgatagactatgtt |
28295711 |
T |
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| Q |
201 |
ggcatcactaggatcaaaattgggatatttgaagtgaattgag |
243 |
Q |
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| T |
28295712 |
ggcatcactaggatcaaaactgggatatttgaagtgaattgag |
28295754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 28305717 - 28305955
Alignment:
| Q |
4 |
aatgaaggtgatctaccttgagtgttgattataaaagtgtaatgagttgtgaagtcagtgagttttcttgtgtttgaatcccaaagtaacactttttctg |
103 |
Q |
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| T |
28305717 |
aatgaaggtgatctacctcgagtgttgatgataaaagtgtagtgagttgtgaagtcagtgagttgacctgtttttgagtcccaaagtaacacctttttgg |
28305816 |
T |
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| Q |
104 |
aatagaagactcttccaacttgacaagaataattttcattgatgttgaaattaacttctccatcacgaggtgctgcagaaccttggtagactatgttggc |
203 |
Q |
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| T |
28305817 |
aatacaaagcccatccaacttgacatgaataatttccattgatgttaaaatcaacttctccatcaactggtgctgcagaaccttggtagattatgttggc |
28305916 |
T |
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| Q |
204 |
atcactaggatcaaaattgggatatttgaagtgaattga |
242 |
Q |
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| T |
28305917 |
atcatttggattaaaactgggaatttggaagtgaattga |
28305955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 28288025 - 28287823
Alignment:
| Q |
21 |
ttgagtgttgattataaaagtgtaatgagttgtgaagtcagtgagttttcttgtgtttgaatcccaaagtaacactttttctgaatagaagactcttcca |
120 |
Q |
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|||||||| ||| ||||| |||||||| ||||||||||||||||||| | | | ||||| ||||| ||||| ||||| | ||| | | |||||||||| |
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| T |
28288025 |
ttgagtgtcgataataaaggtgtaatgggttgtgaagtcagtgagttgacctatttttgagtcccatagtaaaactttcttggaaaatatgactcttcca |
28287926 |
T |
|
| Q |
121 |
acttgacaagaataattt---tcattgatgttgaaattaacttctccatcacgaggtgctgcagaaccttggtagactatgttggcatcactaggatcaa |
217 |
Q |
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| T |
28287925 |
acttgactagtataatatgcatcattgatgttgaaatcaacctctccatcgattggtgctgcagaaccttggtagactatgttggcatcactaggattaa |
28287826 |
T |
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| Q |
218 |
aat |
220 |
Q |
| |
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||| |
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| T |
28287825 |
aat |
28287823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 28265710 - 28265931
Alignment:
| Q |
21 |
ttgagtgttgattataaaagtgtaatgagttgtgaagtcagtgagttttcttgtgtttgaatcccaaagtaacactttttctgaatagaagactcttcca |
120 |
Q |
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|||||||| || |||||||||||||| ||| |||| ||||||| || | ||| |||||||||||||||||||| ||| ||||| | | | |||||| |
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| T |
28265710 |
ttgagtgtcaatgataaaagtgtaatgggttttgaaatcagtgacttgacctgtttttgaatcccaaagtaacacctttctggaatacatggcccttcca |
28265809 |
T |
|
| Q |
121 |
acttgacaagaataattttcattgatgttgaaattaacttctccatcacgaggtgctgcagaaccttggtagactatgttggcatcactaggatcaaaat |
220 |
Q |
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| T |
28265810 |
acttgaaatggatacttttcataaatgttaaaatcaacctttccatctcgtggtgctgctgaaccttggtagactatgtttgcatcattaggattaaaac |
28265909 |
T |
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| Q |
221 |
tgggatatttgaagtgaattga |
242 |
Q |
| |
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||| | || |||||||||||| |
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| T |
28265910 |
tggtaatttggaagtgaattga |
28265931 |
T |
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