View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11374_high_14 (Length: 416)

Name: NF11374_high_14
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11374_high_14
NF11374_high_14
[»] chr4 (8 HSPs)
chr4 (20-400)||(54678317-54678701)
chr4 (204-400)||(54687625-54687818)
chr4 (204-388)||(26997240-26997422)
chr4 (211-400)||(52311185-52311372)
chr4 (204-388)||(26992043-26992228)
chr4 (265-388)||(20275952-20276073)
chr4 (211-388)||(17365715-17365889)
chr4 (204-286)||(22746678-22746759)
[»] chr7 (4 HSPs)
chr7 (206-384)||(33190270-33190445)
chr7 (211-388)||(39865464-39865639)
chr7 (206-400)||(26617712-26617901)
chr7 (270-322)||(37479560-37479612)
[»] chr1 (4 HSPs)
chr1 (247-400)||(40279158-40279309)
chr1 (221-398)||(40274346-40274519)
chr1 (210-278)||(29530252-29530320)
chr1 (204-248)||(26023622-26023666)
[»] chr5 (4 HSPs)
chr5 (211-388)||(19779927-19780102)
chr5 (246-388)||(19479453-19479593)
chr5 (211-388)||(19783175-19783349)
chr5 (255-400)||(16633272-16633414)
[»] chr8 (6 HSPs)
chr8 (203-299)||(10739135-10739231)
chr8 (204-322)||(10734076-10734194)
chr8 (204-299)||(15007176-15007270)
chr8 (204-322)||(17909897-17910016)
chr8 (204-283)||(36911894-36911973)
chr8 (270-322)||(28350580-28350632)
[»] chr3 (3 HSPs)
chr3 (202-346)||(8832496-8832640)
chr3 (275-366)||(39875817-39875906)
chr3 (203-322)||(44126675-44126795)
[»] chr6 (1 HSPs)
chr6 (204-292)||(23599900-23599988)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 54678317 - 54678701
Alignment:
Q  20 ataatggtctttatggagggccccgttgtcctttgggtgctcagagagaactcgtccccgtccatctattattatatgttaagtgaatgattaatcgtgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54678317 ataatggtctttatggagggccccgttgtcctttgggtgctcagagagaactcgtccccgtccatctattattatatgttaagtgaatgattaatcgtgc 54678416  T
Q  120 ttaatacacattacacacct----gcaaaaatatgttacttgcatatgattttcattttgaaatatcttgctcctnnnnnnntgtgtatgttaagaaata 215  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||    
T  54678417 ttaatacacattacacacctacctgcaaaaatatgttacttgcatatgattttcattttgaaatatcttgctcataaaaaaatgtgtatgttaagaaata 54678516  T
Q  216 aaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatgagtcct 315  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||    
T  54678517 aaggaaaaacacaagatcaaagaagaagaggaaggagaagatgaaaacactttttattattctcttcacaaacgtatctttacaatataatatgagtcct 54678616  T
Q  316 atttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaattggggttatagg 400  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||    
T  54678617 atttataatacacaagatgagtaagtaagtgtgatcaatgaaattaaggtccaccaactattcacttaataacgggggttatagg 54678701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 204 - 400
Target Start/End: Original strand, 54687625 - 54687818
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatac 303  Q
    ||||||||||||||| |||| ||||| ||||||||| | ||||||||||||||||||| |||||| |||| |||||||||||| |||||||||| |||||    
T  54687625 tgttaagaaataaagtaaaagcacaaaatcaaagaagaagaggaaggagaagatgaaatcactttgtattattctcttcacaagtgtatctttataatac 54687724  T
Q  304 aatatgagtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaattggggttatagg 400  Q
    |||||||  |||||||||| || ||||||| |||||||||  ||||||||| ||||| |||||| | || |||||||||||||| ||||||||||||    
T  54687725 aatatgaaccctatttatagtatacaagatgagtaagtaa--gtgatcaagaaaattgaggtcccctaattattcacttactaa-tggggttatagg 54687818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 388
Target Start/End: Complemental strand, 26997422 - 26997240
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatac 303  Q
    ||||||||||||||| |||  ||||||||||||||| | ||| ||||||||||||||| |||||| |||| |||||||||||| | | ||||| |||||     
T  26997422 tgttaagaaataaagtaaatgcacaagatcaaagaagaagagaaaggagaagatgaaagcactttgtattattctcttcacaagtatgtctttgcaatat 26997323  T
Q  304 aatatgagtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaat 388  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||  |||| |  |||||||| |||  |||||||||||||||||    
T  26997322 aatatgagtcctatttatagtacacaagatgagtaagttagtgt--tcaaagctattaaggttcactgactattcacttactaat 26997240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 211 - 400
Target Start/End: Original strand, 52311185 - 52311372
Alignment:
Q  211 aaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatga 310  Q
    |||||||  ||||||||||||||||||||   || |||| ||| |||||||||| ||| |||| |||||||||||||||| |||||||| | ||||||||    
T  52311185 aaataaactaaaaacacaagatcaaagaagtagaagaagaagatgatgaaaacattttgtattattctcttcacaaatgtgtctttacactgcaatatga 52311284  T
Q  311 gtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaattggggttatagg 400  Q
     |||||||||||  ||||||||| | |||||  | |||||||| ||||||||||||||| ||||||||||| || ||| |||||||||||    
T  52311285 atcctatttataggacacaagatgactaagt--gagtgatcaaagaaattaaggtccactaactattcactcaccaataggggttatagg 52311372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 204 - 388
Target Start/End: Complemental strand, 26992228 - 26992043
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgtt---ctcttcacaaatgtatctttacaa 300  Q
    ||||||||||||||| |||  ||||||||||||||| | |||||| ||||||||||||  ||||| |||| ||   |||||||||| | ||||||| |||    
T  26992228 tgttaagaaataaagtaaatgcacaagatcaaagaagaagaggaaagagaagatgaaagtactttgtattattattctcttcacaagtatatctttgcaa 26992129  T
Q  301 tacaatatgagtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaat 388  Q
    || |||||||| |||||||||| |||||  ||| | ||||| ||||  ||||||| ||||||||||||| ||||||||||||||||||    
T  26992128 tataatatgagccctatttatagtacacgggatgaataagttagtg--atcaaggcaattaaggtccactaactattcacttactaat 26992043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 20276073 - 20275952
Alignment:
Q  265 ctttctattgttctcttcacaaatgtatctttacaatacaatatgagtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaagg 364  Q
    |||| |||| |||| ||||||  ||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||  | |||||||||| | ||||||    
T  20276073 ctttgtattattctgttcacatgtgtgtctttacaatacaatatgagtcctatttatagtacataagatgagtaagt--gagtgatcaaggcagttaagg 20275976  T
Q  365 tccaccaactattcacttactaat 388  Q
    ||||| ||||||||||||||||||    
T  20275975 tccactaactattcacttactaat 20275952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 388
Target Start/End: Complemental strand, 17365889 - 17365715
Alignment:
Q  211 aaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatga 310  Q
    |||||||  |||| ||||| |||||||||   ||||||| ||| | |||||||| ||| |||| || | |||||||| || |||||||| || |||| ||    
T  17365889 aaataaactaaaagcacaatatcaaagaagcagaggaagaagatggtgaaaacattttgtattattttgttcacaaaggtttctttacactataata-ga 17365791  T
Q  311 gtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaat 388  Q
    | | ||||||||  ||||||||| ||||||| ||||  ||||| ||||||||||||||| ||||||||||| ||||||    
T  17365790 gccttatttataggacacaagatgagtaagtgagtg--atcaaagaaattaaggtccactaactattcactcactaat 17365715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 22746759 - 22746678
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaa 286  Q
    ||||||||||||||  ||||||| |||||||||||| | ||||| | |||||||||||  ||||| |||| ||||||||||||    
T  22746759 tgttaagaaataaac-aaaaacataagatcaaagaagacgaggaggaagaagatgaaagtactttgtattattctcttcacaa 22746678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 206 - 384
Target Start/End: Original strand, 33190270 - 33190445
Alignment:
Q  206 ttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaa 305  Q
    ||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||| |||||| |||| |||||||||||| ||| ||||| ||||||||    
T  33190270 ttaagaaataaagtaaaagcacaagatcaaagaagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaa 33190369  T
Q  306 tatgagtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttac 384  Q
    |||||| |||| |||||||||||||||| |||||||  | |||||||||| || |||||||||  ||||||||||||||    
T  33190370 tatgagaccta-ttataatacacaagatgagtaagt--gagtgatcaaggcaactaaggtccagtaactattcacttac 33190445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 388
Target Start/End: Complemental strand, 39865639 - 39865464
Alignment:
Q  211 aaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatga 310  Q
    |||||||| |||| ||||||||||||||| | ||||||||||||||||||| |||||| |||| |||||||||  | ||| ||||| |||||| ||||||    
T  39865639 aaataaagtaaaagcacaagatcaaagaagaagaggaaggagaagatgaaagcactttgtattattctcttcaagagtgtgtctttgcaatacgatatga 39865540  T
Q  311 gtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaat 388  Q
    | |||||||||| |||||||||| |||||||  | |||||||||  ||||||||||||| ||||||||||||||||||    
T  39865539 gccctatttatagtacacaagatgagtaagt--gagtgatcaagacaattaaggtccactaactattcacttactaat 39865464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 206 - 400
Target Start/End: Original strand, 26617712 - 26617901
Alignment:
Q  206 ttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaa 305  Q
    ||||||||||||  |||| |||||||||||||||   ||||||| |||||||||||||||||| |||| |||||||||||| ||| |||||||||| |||    
T  26617712 ttaagaaataaactaaaagcacaagatcaaagaa---gaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgtctttacaattcaa 26617808  T
Q  306 tatgagtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaattggggttatagg 400  Q
    |||||| ||||||||||  |  |||||| | |||||  | |||||||||  ||||||||||||| ||||||||||| | |||| |||||||||||    
T  26617809 tatgagccctatttataggattcaagatgaataagt--gagtgatcaagataattaaggtccactaactattcactcattaatgggggttatagg 26617901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 37479560 - 37479612
Alignment:
Q  270 tattgttctcttcacaaatgtatctttacaatacaatatgagtcctatttata 322  Q
    |||| |||||||||||||||| |||||||| | ||||||  ||||||||||||    
T  37479560 tattattctcttcacaaatgtttctttacattgcaatataggtcctatttata 37479612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 247 - 400
Target Start/End: Original strand, 40279158 - 40279309
Alignment:
Q  247 aaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatgagtcctatttataatacacaagataagtaagtaagtg 346  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||||  |||||||||| |||||||||| |||||||  | |    
T  40279158 aaggagaagatgaaaacactttatattattctcttcacaaatgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagtaagt--gag 40279255  T
Q  347 tgatcaaggaaattaaggtccaccaactattcacttactaattggggttatagg 400  Q
    ||||||||| ||||||||||||| |||||||||||||||||| || ||||||||    
T  40279256 tgatcaaggcaattaaggtccactaactattcacttactaatgggagttatagg 40279309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 221 - 398
Target Start/End: Original strand, 40274346 - 40274519
Alignment:
Q  221 aaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatgagtcctattta 320  Q
    |||||| ||||||||||||   ||||||||||||||||||| |||||| |||| |||||||||||| ||| ||||| ||||||||||| || ||||||||    
T  40274346 aaaacaaaagatcaaagaa---gaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatattagccctattta 40274442  T
Q  321 taatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaacta-ttcacttactaattggggttata 398  Q
    ||||||||||||| |||||||  | |||||||||| |||||| |||||| ||||| ||||||||||||| || ||||||    
T  40274443 taatacacaagatgagtaagt--gagtgatcaaggcaattaaagtccactaactatttcacttactaatgggagttata 40274519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 29530320 - 29530252
Alignment:
Q  210 gaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttct 278  Q
    ||||||||  |||| ||||||||||||||| | ||||||| || ||||||||||||||| |||| ||||    
T  29530320 gaaataaactaaaagcacaagatcaaagaagaagaggaagaaggagatgaaaacactttgtattattct 29530252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 26023666 - 26023622
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaa 248  Q
    ||||||||||||||| |||| ||||||||||||||| | ||||||    
T  26023666 tgttaagaaataaagtaaaagcacaagatcaaagaagatgaggaa 26023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 211 - 388
Target Start/End: Original strand, 19779927 - 19780102
Alignment:
Q  211 aaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatga 310  Q
    |||||||| |||| ||||||||||||||| | |||||| |||||||| ||| |||||| |||| |||||||||  | ||| |||||  ||||||||||||    
T  19779927 aaataaagtaaaagcacaagatcaaagaagaagaggaatgagaagataaaagcactttgtattattctcttcaagagtgtgtctttgtaatacaatatga 19780026  T
Q  311 gtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaat 388  Q
    | |||||||||| |||||||||  |||||||  | |||||||||| ||||||||||||| ||||||||||||||||||    
T  19780027 gccctatttatagtacacaagacgagtaagt--gagtgatcaaggtaattaaggtccactaactattcacttactaat 19780102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 246 - 388
Target Start/End: Original strand, 19479453 - 19479593
Alignment:
Q  246 gaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatgagtcctatttataatacacaagataagtaagtaagt 345  Q
    |||| |||||||||||  ||||| |||| ||||||| | || ||| ||||||||||||||||| || |||||||||| |||||||||| ||||||   |     
T  19479453 gaagaagaagatgaaagaactttgtattattctctttataagtgtgtctttacaatacaatataagccctatttatagtacacaagatgagtaag--cga 19479550  T
Q  346 gtgatcaaggaaattaaggtccaccaactattcacttactaat 388  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  19479551 gtgatcaaggcaattaaggtccactaactattcacttactaat 19479593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 388
Target Start/End: Original strand, 19783175 - 19783349
Alignment:
Q  211 aaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatga 310  Q
    |||||||| |||| || ||||||||| || | ||| ||||||||||| ||| |||||| |||| |||||||||  | ||| ||||| | |||||||||||    
T  19783175 aaataaagtaaaagcataagatcaaaaaagaagagaaaggagaagataaaagcactttgtattattctcttcaagagtgtgtctttgc-atacaatatga 19783273  T
Q  311 gtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtccaccaactattcacttactaat 388  Q
    |  ||||||||| |||||||||| |||||||  | ||||| || | ||||||| ||||| ||||||||||||||||||    
T  19783274 gcactatttatagtacacaagatgagtaagt--gagtgatgaaagcaattaagttccactaactattcacttactaat 19783349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 400
Target Start/End: Original strand, 16633272 - 16633414
Alignment:
Q  255 gatgaaaacactttctattgttctcttcacaaatgtatctttacaatacaatatgagtcctatttataatacacaagataagtaagtaagtgtgatcaag 354  Q
    |||||||||  ||| |||| ||||||||||||  || ||||| |||||||||||||| ||||||||||  ||||||| | |||||||  |  |||||||     
T  16633272 gatgaaaaccttttatattattctcttcacaagcgtgtctttgcaatacaatatgagccctatttataggacacaagttgagtaagt--gaatgatcaaa 16633369  T
Q  355 gaaattaaggtccaccaactattcacttactaattggggttatagg 400  Q
    | ||||||||||||| |||||||||||  |||| ||||||||||||    
T  16633370 gtaattaaggtccactaactattcactcgctaa-tggggttatagg 16633414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 10739231 - 10739135
Alignment:
Q  203 atgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttaca 299  Q
    |||||||||||||||| |||| ||||||||||||||| | ||| | ||||||||||||| |||||| |||| |||||||||||| | ||||||||||    
T  10739231 atgttaagaaataaagtaaaagcacaagatcaaagaagaagagaatggagaagatgaaagcactttgtattattctcttcacaagtatatctttaca 10739135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 10734194 - 10734076
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaatac 303  Q
    ||||||||||||||| |||  |||||||||||| || | ||| | | |||||||||||||||||| |||| |||||||||||| | ||||||||||  ||    
T  10734194 tgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatgaagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgac 10734095  T
Q  304 aatatgagtcctatttata 322  Q
    ||| |  ||||||||||||    
T  10734094 aatgtaggtcctatttata 10734076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 15007270 - 15007176
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttaca 299  Q
    ||||| ||||||||| |||| |||| |||||||||| | ||||||||||||||||||| |||||| ||||  ||||||||| | ||| ||||||||    
T  15007270 tgttatgaaataaagtaaaagcacaggatcaaagaagatgaggaaggagaagatgaaagcactttgtatt-atctcttcaccagtgtgtctttaca 15007176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 17910016 - 17909897
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgt-atctttacaata 302  Q
    |||||| |||||||| |||| |||||||||||| || | |||||||||||||||||||  ||||| |||| |||||||| ||| |||  |||||||| |     
T  17910016 tgttaaaaaataaagtaaaagcacaagatcaaaaaagatgaggaaggagaagatgaaagtactttgtattattctcttctcaagtgtgttctttacattg 17909917  T
Q  303 caatatgagtcctatttata 322  Q
      |||| |||||||||||||    
T  17909916 agatataagtcctatttata 17909897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 36911894 - 36911973
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttca 283  Q
    ||||| ||||||||  |||| ||||||||||||||| | ||||||| ||||| |||||||||||| |||| |||||||||    
T  36911894 tgttatgaaataaactaaaagcacaagatcaaagaagaagaggaagaagaaggtgaaaacactttttattattctcttca 36911973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 28350580 - 28350632
Alignment:
Q  270 tattgttctcttcacaaatgtatctttacaatacaatatgagtcctatttata 322  Q
    ||||||| ||||||||||||| ||||||||  | || ||||||||||||||||    
T  28350580 tattgttttcttcacaaatgtctctttacatcaaaacatgagtcctatttata 28350632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 346
Target Start/End: Original strand, 8832496 - 8832640
Alignment:
Q  202 tatgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatctttacaat 301  Q
    |||||||  |||||||| |||| |||  |||||||| | | ||||||||||| ||||||| |||||| |||| |||||||||  | ||| ||||| ||||    
T  8832496 tatgttataaaataaagtaaaagcacgggatcaaaggagaagaggaaggagaggatgaaatcactttgtattattctcttcaagactgtgtctttgcaat 8832595  T
Q  302 acaatatgagtcctatttataatacacaagataagtaagtaagtg 346  Q
    |||||||||  |||||||||| |||||||||| ||||||| ||||    
T  8832596 acaatatgaaccctatttatagtacacaagatgagtaagtgagtg 8832640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 39875906 - 39875817
Alignment:
Q  275 ttctcttcacaaatgtatctttacaatacaatatgagtcctatttataatacacaagataagtaagtaagtgtgatcaaggaaattaaggtc 366  Q
    |||||||||||| ||| ||||| |||||||||| |||   |||||||| |||||||||| |||||||  | |||||||||| ||||||||||    
T  39875906 ttctcttcacaagtgtgtctttgcaatacaataggagctttatttatagtacacaagatgagtaagt--gagtgatcaaggcaattaaggtc 39875817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 44126675 - 44126795
Alignment:
Q  203 atgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtatc-tttacaat 301  Q
    |||||||||||||||  |||| || ||||||||| || | ||| ||| |||||||||||  ||||| |||| |||||||||||| ||| || || ||| |    
T  44126675 atgttaagaaataaattaaaagcataagatcaaataagaagagaaagaagaagatgaaagtactttgtattattctcttcacaagtgtgtcattcacatt 44126774  T
Q  302 acaatatgagtcctatttata 322  Q
    |||||||  ||||||||||||    
T  44126775 acaatataggtcctatttata 44126795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 23599900 - 23599988
Alignment:
Q  204 tgttaagaaataaaggaaaaacacaagatcaaagaacaggaggaaggagaagatgaaaacactttctattgttctcttcacaaatgtat 292  Q
    ||||||||||||||  |||| ||||||||||||||| | || |||| ||||||||||| || ||| |||| ||||||||| || |||||    
T  23599900 tgttaagaaataaactaaaagcacaagatcaaagaagaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgtat 23599988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University