View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_high_15 (Length: 410)
Name: NF11374_high_15
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 45633039 - 45632708
Alignment:
| Q |
1 |
tcaaccacgttgatcatgttcatagtagtccttgtatgatttatatttcaaggactaaaattatatggtctacatatttatagactaatataaacaaaag |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45633039 |
tcaaccacgttgatcatgttaatagtagtccttgtatgatttatatttcaaggactaaaattatatggtctaaatatttatagactaatataaacaaaag |
45632940 |
T |
|
| Q |
101 |
taatgaagataagcaaggtagtggctctgaaaatattcttaaaagatccaagctgtttactctcac----tttcgccatgtagtctgcacattgtcttct |
196 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||| |
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| T |
45632939 |
taaagaagataagcaaggtagtggctctaaaaatattcttaaaagatccaagctgtttccttccacgtacttttgccatgtagtctgcacattgtcttct |
45632840 |
T |
|
| Q |
197 |
ctataaatatggactaatgaaacaactctgtctctagacataagctctttgatactatatgtagtctcaacatatttattagactgagatgtagagtctt |
296 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
45632839 |
ctataaatatggactaatgaaacaactctgtttctagacataagctctttgatactatatgtagtctcaacatatttattaggctgagatgttgagtctt |
45632740 |
T |
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| Q |
297 |
gaatcaaagatatagcctccatacaatcactt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
45632739 |
gaatcaaagatatagcctccatacaatcactt |
45632708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 395
Target Start/End: Complemental strand, 45632677 - 45632611
Alignment:
| Q |
330 |
caagctaacattaatccaaatattatgcc-tatcagttcaaattctaaactgtcagcaaaattaatg |
395 |
Q |
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| T |
45632677 |
caagctaacattaatccaaatattatgccctattagttcaaattctaaactgtcagcaaaattaatg |
45632611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 45632381 - 45632333
Alignment:
| Q |
41 |
ttatatttcaaggactaaaattatatggtctacatatttatagactaat |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45632381 |
ttatatttcaaggactaaaattatatggtctacatatttatagaataat |
45632333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 34034800 - 34034715
Alignment:
| Q |
227 |
tctctagacataagctctttgatactatatgtagtctcaacatatttattagactgagatgtagagtcttgaatcaaagatatagc |
312 |
Q |
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| T |
34034800 |
tctctagacacaagctccttgatactctccgtaatctcaacatatttatgaggctgagatgttgagtcttgactcaataatatagc |
34034715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 2658214 - 2658545
Alignment:
| Q |
1 |
tcaaccacgttgatcatgttcatagtagtccttgtatgatttatatttcaaggactaaaattatatggtctacatatttatagactaatataaacaaaag |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2658214 |
tcaaccacgttgatcatgttaatagtagtccttgtatgatttatatttcaaggactaaaattatatggtctaaatatttatagactaatataaacaaaag |
2658313 |
T |
|
| Q |
101 |
taatgaagataagcaaggtagtggctctgaaaatattcttaaaagatccaagctgtttactctcac----tttcgccatgtagtctgcacattgtcttct |
196 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||| |
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| T |
2658314 |
taaagaagataagcaaggtagtggctctaaaaatattcttaaaagatccaagctgtttccttccacgtacttttgccatgtagtctgcacattgtcttct |
2658413 |
T |
|
| Q |
197 |
ctataaatatggactaatgaaacaactctgtctctagacataagctctttgatactatatgtagtctcaacatatttattagactgagatgtagagtctt |
296 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
2658414 |
ctataaatatggactaatgaaacaactctgtttctagacataagctctttgatactatatgtagtctcaacatatttattaggctgagatgttgagtctt |
2658513 |
T |
|
| Q |
297 |
gaatcaaagatatagcctccatacaatcactt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
2658514 |
gaatcaaagatatagcctccatacaatcactt |
2658545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 2658576 - 2658642
Alignment:
| Q |
330 |
caagctaacattaatccaaatattatgcc-tatcagttcaaattctaaactgtcagcaaaattaatg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
2658576 |
caagctaacattaatccaaatattatgccctattagttcaaattctaaactgtcagcaaaattaatg |
2658642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 2658872 - 2658920
Alignment:
| Q |
41 |
ttatatttcaaggactaaaattatatggtctacatatttatagactaat |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2658872 |
ttatatttcaaggactaaaattatatggtctacatatttatagaataat |
2658920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 34888953 - 34888875
Alignment:
| Q |
226 |
gtctctagacataagctctttgatactatatgtagtctcaacatatttattagactgagatgtagagtcttgaatcaaa |
304 |
Q |
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|||||||||||||| ||| |||||||||| | | ||||||||||||||| ||| |||||||| ||||||||||||||| |
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| T |
34888953 |
gtctctagacataacctccttgatactatcttttatctcaacatatttatgagattgagatgttgagtcttgaatcaaa |
34888875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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