View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_high_17 (Length: 387)
Name: NF11374_high_17
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 34431679 - 34432038
Alignment:
| Q |
18 |
caagtactactccttgtctcatttgataatggagtagtggaagaagatgaacatgacaaagatggtgaaaataaagaaaatggtgacatagaatgacatg |
117 |
Q |
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| T |
34431679 |
caagtactactccttgtctcatttgataatggagtagtggaagaagatgaacatgacaaagatggtgaaaataaagaaaatggtgacatagaatgacatg |
34431778 |
T |
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| Q |
118 |
taaaaacaggcttaaaaatgaacaaagcatgttttaaaccaggactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatg |
217 |
Q |
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| T |
34431779 |
taaaaacaggcttaaaaatgaacaaagcatgttttaaaccaggactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatg |
34431878 |
T |
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| Q |
218 |
aatcaattcattccctctaaatttccattgcaagtgcttcacatgaaccaccaaatgcccatcaaatcttatctccatttctggttgaacttgaacacca |
317 |
Q |
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| T |
34431879 |
aatcaattcattccctctaaatttccattgcaagtgcttcacatgaaccaccaaatgcccatcaaatcttatctccatttctggttgaacttgaacacca |
34431978 |
T |
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| Q |
318 |
ccaccaatcatcacagaatctccatctccaacaacattattactactattacttcctttg |
377 |
Q |
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| T |
34431979 |
ccaccaatcatcacagaatctccatctccaacaacattattaccactattacttcctttg |
34432038 |
T |
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Back To:
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Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 126 - 308
Target Start/End: Original strand, 43402744 - 43402926
Alignment:
| Q |
126 |
ggcttaaaaatgaacaaagcatgttttaaaccaggactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatgaatcaatt |
225 |
Q |
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| T |
43402744 |
ggcttaaaaataaacaaagcatgtttcaaaccaggactaaataaccaatcatgaacatcccaataaacttcaattctcattttactaagatgaactgatt |
43402843 |
T |
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| Q |
226 |
cattccctctaaatttccattgcaagtgcttcacatgaaccaccaaatgcccatcaaatcttatctccatttctggttgaact |
308 |
Q |
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|||| |||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||| ||||| |||||| |
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| T |
43402844 |
cattacctctaaacttccattgcaaatgcttcacatgaatcaccaaatgtccatcaattcttatctccatctctggctgaact |
43402926 |
T |
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