View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11374_high_23 (Length: 326)

Name: NF11374_high_23
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11374_high_23
NF11374_high_23
[»] chr7 (1 HSPs)
chr7 (15-307)||(12011902-12012194)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 12011902 - 12012194
Alignment:
Q  15 agaacaagctttgaggagaaaagggaaagtgtgtttaccagggatagcaccgtgtctacgcatttgaatgtaaagggagagagaaatgcggggttgttgt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  12011902 agaacaagctttgaggagaaaagggaaagtgtgtttaccagggataacaccgtgtctacgcatttgaatgtaaagggaaagagaaatgtggggctgttgt 12012001  T
Q  115 tgttgatgagcgcggatgagagtgttccacatgaatgaattgggtttgtgtaaggaggagaagattctagaagcgtgttcgaggttaccgaaaggggaga 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12012002 tgttgatgcgcgcggatgagagtgttccacatgaatgaattgggtttgtgtaaggaggagaagattctagaagcgtgttcgaggttaccgaaaggggaaa 12012101  T
Q  215 gagcaaaagaggagaataaacggcttgtggcgaattggtcgttgatgcgggatgtgatgatcatttgagcgtggatttgtttgaggtgttgta 307  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012102 gagcgaaagaggagaataaacggcttgtggcgaattggtcgttgatgcgggatgtgatgatcatttgagcgtggatttgtttgaggtgttgta 12012194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University