View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11374_high_34 (Length: 246)
Name: NF11374_high_34
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_high_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 7136796 - 7136619
Alignment:
| Q |
11 |
cacagaaaagaaaaacaaattaccgaaataacatcacaaacatttcaaattttgttcctgctatttgaagaaaatgagtcaaaccaaatattcaaccggc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
7136796 |
cacagaaaagaaaaacaaattaccgaaataacatcacaaacatttcaaattttgttcctgctatttgaagaaaatgagtcaaaccaaatagtcaaccagc |
7136697 |
T |
|
| Q |
111 |
ggtgagttgatattcaactctatataacatcacatacgaattgaattaccacctagactatcaattctatttattaac |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7136696 |
ggtgagttgatattcaactctatataacatcacatacgaattgaattaccacctagactatcaattctatttattaac |
7136619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University