View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_high_6 (Length: 603)
Name: NF11374_high_6
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_high_6 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0150 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 226 - 461
Target Start/End: Complemental strand, 18233585 - 18233354
Alignment:
| Q |
226 |
ggatagatttctagtttcaattattattattatgagttattaatagtaaaacctttcgcatattccagctctgccttttgagtatttctcaaccttttgt |
325 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18233585 |
ggatagatttctagtttcaattattattat---gagttattaatagtaaaacctttcgcatattccagctctgccttttgagtatttctcaaccttttgt |
18233489 |
T |
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| Q |
326 |
taacaaaatcatgttattatcttcacttaagtc---actacacttgcttgaattatacaatgaactgatgaagcatatttgtgaaacattctcttgtttt |
422 |
Q |
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|||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18233488 |
taacaaaatcatgttattattttcacttaagtcagaactaca----cttgaattatacaatgaactgatgaagcatatttgtgaaacattctcttgtttt |
18233393 |
T |
|
| Q |
423 |
cagactctgattgtgacataaacacactgtgactagttg |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
18233392 |
cagactctgattgtgacataaacacactgtgactagttg |
18233354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 18233775 - 18233648
Alignment:
| Q |
14 |
cagagacgaagggagttccaatcgaagaaatgtcaaccgtatgggagaagcatccttattggagtgattttgttcaagcgaaacccaaacccaatgatca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18233775 |
cagagacgaagggagttccaatcgaagaaatgtcaaccgtatgggagaaacatccttattggagtgattttgttaaagcgaaacccaaacccaatgatca |
18233676 |
T |
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| Q |
114 |
agagttagggcagctttagattcttaag |
141 |
Q |
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| T |
18233675 |
agagttagggcagcgttagattcttaag |
18233648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 493 - 586
Target Start/End: Complemental strand, 18233322 - 18233230
Alignment:
| Q |
493 |
atatacccatgaaaacatatgggaccagcagaagtaatgaaaacaaattaccaaactgggactatcaaacatgcacatatgtagactgcaaaat |
586 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18233322 |
atatacccatgaaaacatataggaccaacagaagtaatgaaaacaaattaccaaa-tgggactatcaaacatgcacatatgtagactgcaaaat |
18233230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 167; Significance: 4e-89; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 226 - 450
Target Start/End: Original strand, 131622 - 131842
Alignment:
| Q |
226 |
ggatagatttctagtttcaattattattattatgagttattaatagtaaaacctttcgcatattccagctctgccttttgagtatttctcaaccttttgt |
325 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
131622 |
ggataaatttctagtttcaatta---ttattatgagttattaatagtaaaacctttcgcatattccagctctgccttttgagtacttctcaaccttttgt |
131718 |
T |
|
| Q |
326 |
taacaaaatcatgttattatcttcacttaagtc---actacacttgcttgaattatacaatgaactgatgaagcatatttgtgaaacattctcttgtttt |
422 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
131719 |
taacaaaatcatgttattatcttcacttaagtcagaactaca----cttgaattatacaatgaactgatgaagtatatttgtgaaacattctcttgtttt |
131814 |
T |
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| Q |
423 |
cagactctgattgtgacataaacacact |
450 |
Q |
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|||||||||||||||| ||||||||||| |
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| T |
131815 |
cagactctgattgtgatataaacacact |
131842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 494 - 586
Target Start/End: Original strand, 131884 - 131976
Alignment:
| Q |
494 |
tatacccatgaaaacatatgggaccagcagaagtaatgaaaacaaattaccaaactgggactatcaaacatgcacatatgtagactgcaaaat |
586 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
131884 |
tatacccatgaaaacatataggaccaacagaagtaatgaaaacaaattaccaaacagggactatcaaacatgcacatatgtagactccaaaat |
131976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 126; Significance: 1e-64; HSPs: 4)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 16599 - 16435
Alignment:
| Q |
292 |
agctctgccttttgagtatttctcaaccttttgttaacaaaatcatgttattatcttcacttaagtc---actacacttgcttgaattatacaatgaact |
388 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
16599 |
agctctgccttttgagtacttctcaaccttttgttaacaaaatcatgttattatcttcacttaagtcagaactaca----cttgaattatacaatgaaca |
16504 |
T |
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| Q |
389 |
gatgaagcatatttgtgaaacattctcttgttttcagactctgattgtgacataaacacactgtgacta |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16503 |
gatgaagcatatttgtgaaacattctcttgttttcagactctgattgtgacataaacacactatgacta |
16435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 1433 - 1269
Alignment:
| Q |
292 |
agctctgccttttgagtatttctcaaccttttgttaacaaaatcatgttattatcttcacttaagtc---actacacttgcttgaattatacaatgaact |
388 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
1433 |
agctctgccttttgagtacttctcaaccttttgttaacaaaatcatgttattatcttcacttaagtcataactaca----cttgaattatacaatgaaca |
1338 |
T |
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| Q |
389 |
gatgaagcatatttgtgaaacattctcttgttttcagactctgattgtgacataaacacactgtgacta |
457 |
Q |
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| T |
1337 |
tatgaagcatatttgtgaaacattctcttgttttcagactctgattgtgacataaacacactatgacta |
1269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 493 - 586
Target Start/End: Complemental strand, 16399 - 16306
Alignment:
| Q |
493 |
atatacccatgaaaacatatgggaccagcagaagtaatgaaaacaaattaccaaactgggactatcaaacatgcacatatgtagactgcaaaat |
586 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16399 |
atatacccatgaaaacatataggaccaacagaagtaatgaaaacaaattaccaaacagggactatcaaacatgcacatatgtagactgcaaaat |
16306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 493 - 586
Target Start/End: Complemental strand, 1233 - 1140
Alignment:
| Q |
493 |
atatacccatgaaaacatatgggaccagcagaagtaatgaaaacaaattaccaaactgggactatcaaacatgcacatatgtagactgcaaaat |
586 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1233 |
atatacccatgaaaacatataggaccaatagaagtaatgaaaacaaattaccaaacagggactatcaaacatgcacatatgtagactgcaaaat |
1140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 30866186 - 30866022
Alignment:
| Q |
292 |
agctctgccttttgagtatttctcaaccttttgttaacaaaatcatgttattatcttcacttaagtc---actacacttgcttgaattatacaatgaact |
388 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
30866186 |
agctctgccttttgagtacttctcaaccttttgttaacaaaatcatgttattatcttcacttaagtcataactaca----cttgaattatacaatgaaca |
30866091 |
T |
|
| Q |
389 |
gatgaagcatatttgtgaaacattctcttgttttcagactctgattgtgacataaacacactgtgacta |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30866090 |
aatgaagcatatttgtgaaacattctcttgttttcagactctgattgtgacataaacacactatgacta |
30866022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 493 - 569
Target Start/End: Complemental strand, 30865986 - 30865910
Alignment:
| Q |
493 |
atatacccatgaaaacatatgggaccagcagaagtaatgaaaacaaattaccaaactgggactatcaaacatgcaca |
569 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30865986 |
atatacccatgaaaacatataggaccaatagaagtaatgaaaacaaattaccaaacagggactatcaaacatgcaca |
30865910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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