View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_high_7 (Length: 592)
Name: NF11374_high_7
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 318 - 585
Target Start/End: Original strand, 24543623 - 24543890
Alignment:
| Q |
318 |
tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagataaagaggcagaggaaga |
417 |
Q |
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| T |
24543623 |
tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagaggaagaggaagaggaaga |
24543722 |
T |
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| Q |
418 |
ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt |
517 |
Q |
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| T |
24543723 |
ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt |
24543822 |
T |
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| Q |
518 |
ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatctctgctcctcc |
585 |
Q |
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| T |
24543823 |
ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatcactgatcctcc |
24543890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 24543285 - 24543540
Alignment:
| Q |
17 |
agattcagaagattcagagttctttgggtggaccctcttctgataaagttggcaagggaaaggagaaagagaaccctacactttcacagaaaccacaagt |
116 |
Q |
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| T |
24543285 |
agattcagaagattcagagttctttgggtggaccctcttctgataaagttggcaagggaaaggagaaagagaaccctacactttcacagaaaccacaagt |
24543384 |
T |
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| Q |
117 |
ttacaagaaaccagtaaatgaaaaacccaaacaccatattcgatgggaaggtacattgta--ctcatgtattgattttttatgcatctaactccttttaa |
214 |
Q |
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| T |
24543385 |
ttacaagaaaccagtaaatgaaaaacccaaacaccatattcgatgggaaggtacattgtactctcatgtattgattttttatgcatctaactccttttaa |
24543484 |
T |
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| Q |
215 |
gtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
270 |
Q |
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| T |
24543485 |
gtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
24543540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 24543541 - 24543595
Alignment:
| Q |
250 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
304 |
Q |
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| T |
24543541 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
24543595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 39421626 - 39421574
Alignment:
| Q |
253 |
tatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataaca |
305 |
Q |
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| T |
39421626 |
tatcaaccattgattaacaaatcaaaggtagatattagaagtacaccataaca |
39421574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 3859436 - 3859408
Alignment:
| Q |
256 |
caaccattgattaacaaatcaaagttaga |
284 |
Q |
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| T |
3859436 |
caaccattgattaacaaatcaaagttaga |
3859408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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