View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_10 (Length: 506)
Name: NF11374_low_10
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 44531597 - 44532083
Alignment:
| Q |
1 |
ttcaccacaaccaaaaccaatgtttttaactgaaacttggtttgttttatcatcaccaaaagtgaatgtttcactacctaaaataccttgtgtcatagaa |
100 |
Q |
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| T |
44531597 |
ttcaccacaaccaaaaccaatgtttttaactgaaacttggttttttttatcatcaccaaaagtgaatgtttcactacctaaaataccttgtgtcatagaa |
44531696 |
T |
|
| Q |
101 |
taatcaccatatgaataaacataattgcaaccattgttgctgcaagttggagaaggtaaagcattgcataggttgctactacatgagagtttagaaaagg |
200 |
Q |
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| T |
44531697 |
taatcaccatatgaataaacataattgcaaccattgttgctgcaagttggagaaggtaaagcattgcataggttgctactacatgagagtttagaaaagg |
44531796 |
T |
|
| Q |
201 |
ttgaggannnnnnnggatcaaaaattggtgttggttgtttgtaacattgtgaacaaggttcacattgagtccatatgaggtcacttcctgtatccaaaac |
300 |
Q |
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| T |
44531797 |
ttgaggatttttttggatcaaaaattggtgttggttgtttgtaacattgtgaacaaggttcacattgagtccatatgaggtcacttcctgtatccaaaac |
44531896 |
T |
|
| Q |
301 |
tgctgggtaagaaattggtggtgttccaatggatagttccattagatactcaccgttcccagcgtgaaccggtgcttccacttgagatgaatcttcagtt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
44531897 |
tgctgggtaagaaattggtggtgttccaatggatagttccattagatactcaccgtttccggcgtgaaccggtgcttccacttgagatgaatcttcagtt |
44531996 |
T |
|
| Q |
401 |
gtggatgatgctaacaccattgcatttagtctttgaagtcggctatgtccccggttaatgccatgttgaacgcgctcgagtttagtc |
487 |
Q |
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| T |
44531997 |
gtggatgatgctaacaccattgcatttagtctttgaagtcggctatgtccccggttaatgccatgttgaacgcgctcgagtttagtc |
44532083 |
T |
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