View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11374_low_13 (Length: 465)
Name: NF11374_low_13
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_13 |
 | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Original strand, 17594936 - 17595368
Alignment:
| Q |
17 |
catcatagtcatccttgtgaacaggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggactgaagcggcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |
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|
| T |
17594936 |
catcatagtcatccttgtgaacaggcggatatcatatacaatcatgtcacgagaaaggaacctgaataaatgctcaaagcagcaaggaccgaagcggcat |
17595035 |
T |
|
| Q |
117 |
cattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaaagtaattaatgacaact |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17595036 |
cattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgt-ttcaaatacttcaaaagtaattaatgacaact |
17595134 |
T |
|
| Q |
217 |
caggacttcataatttgtctttaatcaatattata--tatcttccaactatttttctggcgcataggtgcatattaaagaaaaccatccaggttctatat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17595135 |
caggacttcataatttgtctttaatcaatattatatatatcttccaactatttttgtggcgcataggtgcatattaaagaaaaccatccaggttctatat |
17595234 |
T |
|
| Q |
315 |
ttcttcaattaattcatagcacttgcttggtttgattatcatacgttcctatcggagcagaaatgctacacgtcactttatggtgttatcttcaccttca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17595235 |
ttcttcaattaattcatagcacttgcttggtttgattatcatacgttcctctcggagcataaatgctacacgtcactttatggtgttatcttcaccttca |
17595334 |
T |
|
| Q |
415 |
catgtgttttcggtgcatgtatactactatagat |
448 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
17595335 |
catgtgtttttggtgcatgtatactactatagat |
17595368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 282 - 432
Target Start/End: Complemental strand, 26902946 - 26902796
Alignment:
| Q |
282 |
tgcatattaaagaaaaccatccaggttctatatttcttcaattaattcatagcacttgcttggtttgattatcatacgttcctatcggagcagaaatgct |
381 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||| |||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
26902946 |
tgcatattaaagaaaaccatccagattctatatttcctcaattaatacatagaactcgcttaatttgattatcatacgttcctctcggagcataaatgct |
26902847 |
T |
|
| Q |
382 |
acacgtcactttatggtgttatcttcaccttcacatgtgttttcggtgcat |
432 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
26902846 |
acacgtcactttatgatgttatctccactttcacatatgttttcggtgcat |
26902796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 26903054 - 26902954
Alignment:
| Q |
38 |
caggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacga |
137 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| || |
|
|
| T |
26903054 |
caggcggatatcatatacaatcatg-----aggaatgaacccggataaatgctcaaagcagcgaggaccgaagcggcaccattcaaaagaaaattaatga |
26902960 |
T |
|
| Q |
138 |
caaggt |
143 |
Q |
| |
|
|||||| |
|
|
| T |
26902959 |
caaggt |
26902954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 12208101 - 12208136
Alignment:
| Q |
34 |
tgaacaggcggatatcatatacaatcatgtcacgag |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12208101 |
tgaacaggcggatatcatatacaatcatgtcacgag |
12208136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 448
Target Start/End: Complemental strand, 10775698 - 10775667
Alignment:
| Q |
417 |
tgtgttttcggtgcatgtatactactatagat |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10775698 |
tgtgttttcggtgcatgtatactactatagat |
10775667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 17321 - 16892
Alignment:
| Q |
17 |
catcatagtcatccttgtgaacaggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggactgaagcggcat |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
17321 |
catcatagtcatccttatgaacaggcggatataatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggaccgaagcggcgt |
17222 |
T |
|
| Q |
117 |
cattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaaagtaattaatgacaact |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17221 |
cattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgta--gggctgatatatgtcttcaaatacttcaaaagtaattagtgacaact |
17124 |
T |
|
| Q |
217 |
caggacttcataatttgtctttaatcaatattatatatcttccaactatttttctggcgcataggtgcatattaaagaaaaccatccaggttctatattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17123 |
caggacttcataatttgtctttaatcgatattatatatcttccaattatttttctgacgcatatgtgcatattaaagaaaaccatccaggttctatattt |
17024 |
T |
|
| Q |
317 |
cttcaattaattcatagcacttgcttggtttgattatcatacgttcctatcggagcagaaatgctacacgtcactttatggtgttatcttcaccttcaca |
416 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
17023 |
cctcaattaattcatagcacttgctgggtttgactatcatacgttcctctcggagcataaacgctacatgtcactttatggtgttatcttcaccctcaca |
16924 |
T |
|
| Q |
417 |
tgtgttttcggtgcatgtatactactatagat |
448 |
Q |
| |
|
||| |||||||||||| |||||||||| |||| |
|
|
| T |
16923 |
tgttttttcggtgcatatatactactaaagat |
16892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 445
Target Start/End: Complemental strand, 4281455 - 4281037
Alignment:
| Q |
17 |
catcatagtcatccttgtgaacaggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggactgaagcggcat |
116 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
4281455 |
catcatagtcatccttattaacaggtggatatcatatacaatcatatcacgagaaaggagctcggataaatgctcaaagcagcaaggaccgaggcggcat |
4281356 |
T |
|
| Q |
117 |
cattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaaagtaattaatgacaact |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
4281355 |
cattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaaagtaattagtaacaact |
4281256 |
T |
|
| Q |
217 |
caggacttcataatttgtctttaatcaatattatatatcttccaactatttttctggcgcataggtgcatattaaagaaaaccatccaggttctatattt |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4281255 |
caggacttcataatttgtctttaa----------atatcttccaactatttttctggcgcatatgtgcatattaaagaaaaccatccaggttctatattt |
4281166 |
T |
|
| Q |
317 |
cttcaattaattcatagcacttgcttggtttgattatcatacgttcctatcggagcagaaatgctacacgtcactttatggtgttatcttcaccttcaca |
416 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4281165 |
cctcaattaattcatagcacttgcttggtttggttatcatacgttcctctcggagcatagacactacacgtcactttatggtgttatcttcaccctcaca |
4281066 |
T |
|
| Q |
417 |
tgtgttttcggtgcatgtatactactata |
445 |
Q |
| |
|
||| |||||||||||| |||||||||||| |
|
|
| T |
4281065 |
tgttttttcggtgcatatatactactata |
4281037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 12325910 - 12326317
Alignment:
| Q |
17 |
catcatagtcatccttgtgaacaggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggactgaagcggcat |
116 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
12325910 |
catcatagtcctccttatgaacaggcagatatcatatacaatcatg-----aggaatgaacccggataaatgctcaaagcagcgaggaccgaagcggcac |
12326004 |
T |
|
| Q |
117 |
cattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggctgatatatgtcttcaaatacttcaaaagtaattaatgacaact |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||| |
|
|
| T |
12326005 |
cattcaaaagaaaattaatgacaaggttctatattcctgatcttttatgtatagggctgatatatgtcttcaaacatttcaaaagtaattagtaacaact |
12326104 |
T |
|
| Q |
217 |
caggacttcataatttgtctttaatcaatattatatatcttccaactatttttctggcgcataggtgcatattaaagaaaaccatccaggttctatattt |
316 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12326105 |
caggacttcatattttatctttaatcgatatcatatatcttccaactatttttctggtacatatatgcatattaaagaaaaccatccaggttctatattt |
12326204 |
T |
|
| Q |
317 |
cttcaattaattcatagcacttgcttggtttgattatcatacgttcctatcggagcagaaatgctacacgtcactttatggtgttatcttcaccttcaca |
416 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||| ||| |||||| |
|
|
| T |
12326205 |
cctcaattaattcatagcactcgcttggtttgattatcatatgttcctctcggagcataaatgctacacgtcactttatgatgttatctccactttcaca |
12326304 |
T |
|
| Q |
417 |
tgtgttttcggtg |
429 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
12326305 |
tatgttttcggtg |
12326317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 31710433 - 31710557
Alignment:
| Q |
17 |
catcatagtcatccttgtgaacaggcggatatcatatacaatcatgtcacgagaaaggaacccggataaatgctcaaagcagcaaggactgaagcggcat |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31710433 |
catcatagtcatccttatgaacaggcggatatcatatacaatcatgtcacaagaaaggaacccggataaatgctcaaagcagcaaggatcgaagcggcat |
31710532 |
T |
|
| Q |
117 |
cattcaaaagaaaattaacgacaag |
141 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31710533 |
cattcaaaagaaaattaacgacaag |
31710557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 20196581 - 20196726
Alignment:
| Q |
74 |
gaacccggataaatgctcaaagcagcaaggactgaagcggcatcattcaaaagaaaattaacgacaaggttctatattcttgatcttttatgtatagggc |
173 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
20196581 |
gaacacggataaatgctcaaagcagcgaggaccgaagcggcatcattcaaaagaaaattaatgacaaggttctatattcttgatctttaacgtatagggc |
20196680 |
T |
|
| Q |
174 |
tgatatatgtcttcaaatacttcaaaagtaattaatgacaactcag |
219 |
Q |
| |
|
| | ||||||||||||| | |||||| ||||||| ||||||||||| |
|
|
| T |
20196681 |
ttaaatatgtcttcaaacatttcaaatgtaattagtgacaactcag |
20196726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 11203665 - 11203710
Alignment:
| Q |
17 |
catcatagtcatccttgtgaacaggcggatatcatatacaatcatg |
62 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
11203665 |
catcatagtcttccttataaacaggcggatatcatatacaatcatg |
11203710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 20678493 - 20678422
Alignment:
| Q |
334 |
cacttgcttggtttgattatcatacgttcctatcggagcagaaatgctacacgtcactttatggtgttatct |
405 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||| |||| |||||||||| |||||||||| || ||||| |
|
|
| T |
20678493 |
cacttgcctggtttgattatcacacgttccaatcaaagcatgaatgctacacatcactttatgatgatatct |
20678422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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