View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_23 (Length: 356)
Name: NF11374_low_23
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 14813658 - 14813990
Alignment:
| Q |
1 |
caaaacacaaattattggaaatactatcgattaataacatatattccacggttttaattcgtggatgcgcgcggaagtattgtaattgtaggcattgtag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813658 |
caaaacacaaattattggaaatactatcgattaataacatatattccacggttttaattcgtggatgcgcgcggaagtattgtaattgtaggcattgtag |
14813757 |
T |
|
| Q |
101 |
gtgttacaatgcatagtgtggtgttgcaaaggaaatttatannnnnnnagcataaaatgtcataatttattccgtattatttacgcatctattttctata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813758 |
gtgttacaatgcatagtgtggtgttgcaaaggaaatttatatttttttagcataaaatgtcataatttattccgtattatttacgcatctattttctata |
14813857 |
T |
|
| Q |
201 |
tcaaatctcatatttatttttagaacggcaactagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813858 |
tcaaatctcatatttatttttagaacggcaactagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttc |
14813957 |
T |
|
| Q |
301 |
gattaagtgtgtctacctatacgactacgtagc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
14813958 |
gattaagtgtgtctacctatacgactacgtagc |
14813990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 15260653 - 15260985
Alignment:
| Q |
1 |
caaaacacaaattattggaaatactatcgattaataacatatattccacggttttaattcgtggatgcgcgcggaagtattgtaattgtaggcattgtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15260653 |
caaaacacaaattattggaaatactatcgattaataacatatattccacggttttaattcgtggatgcgcgcggaagtattgtaattgtaggcattgtag |
15260752 |
T |
|
| Q |
101 |
gtgttacaatgcatagtgtggtgttgcaaaggaaatttatannnnnnnagcataaaatgtcataatttattccgtattatttacgcatctattttctata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15260753 |
gtgttacaatgcatagtgtggtgttgcaaaggaaatttatatttttttagcataaaatgtcataatttattccgtattatttacgcatctattttctata |
15260852 |
T |
|
| Q |
201 |
tcaaatctcatatttatttttagaacggcaactagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15260853 |
tcaaatctcatatttatttttagaacggcaactagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttc |
15260952 |
T |
|
| Q |
301 |
gattaagtgtgtctacctatacgactacgtagc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
15260953 |
gattaagtgtgtctacctatacgactacgtagc |
15260985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 17520522 - 17520200
Alignment:
| Q |
1 |
caaaacacaaattattggaaatactatcgattaataacatatattccacggttttaattcgtggatgcgcgcggaagtattgtaattgtaggcattgtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17520522 |
caaaacacaaattattggaaatactatctattaataacatatattccacggttttaattcgtggatgcgcgcggaagtattgtaattgtaggcattgtag |
17520423 |
T |
|
| Q |
101 |
gtgttacaatgcatagtgtggtgttgcaaaggaaatttatannnnnnnagcataaaatgtcataatttattccgtattatttacgcatctattttctata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17520422 |
gtgttacaatgcatagtgtggtgttgcaaaggaaatttatattttcttagcatcaaatgtcataatttattccgtattatttacgcatctattttctata |
17520323 |
T |
|
| Q |
201 |
tcaaatctcatatttatttttagaacggcaactagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17520322 |
tcaaatctcatatttatttttagaacagcaactagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaataatttgtttacgcacttc |
17520223 |
T |
|
| Q |
301 |
gattaagtgtgtctacctatacg |
323 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
17520222 |
ggttaagtgtgtctacctatacg |
17520200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 52579771 - 52579694
Alignment:
| Q |
220 |
ttagaacggcaactagtaacagaagattaaagaaataataaatcgcaagacaatg-aacacaatcatttgtttacgca |
296 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||| |
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| T |
52579771 |
ttagaacagcaactagtaacagaagattaaagaaaatgaaaatcgcaagacaatgaaacacgatcgtttgtttacgca |
52579694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 1536122 - 1536208
Alignment:
| Q |
232 |
ctagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgcacttcgattaagtgtgtctacct |
318 |
Q |
| |
|
||||||||| | ||||||||||| |||||||| ||||||||| |||||||| |||||||| || ||| | |||||||||||||| |
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| T |
1536122 |
ctagtaacatatgattaaagaaacaataaatcacaagacaatcaacacaattttttgtttaaacaattcagtcaagtgtgtctacct |
1536208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 43871246 - 43871313
Alignment:
| Q |
229 |
caactagtaacagaagattaaagaaataataaatcgcaagacaatgaacacaatcatttgtttacgca |
296 |
Q |
| |
|
|||||||||||| |||| ||| |||| ||||||| |||||||||||||| ||||||| |||||||| |
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| T |
43871246 |
caactagtaacataagagtaaggaaaccataaatcacaagacaatgaacatgatcatttctttacgca |
43871313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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