View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_24 (Length: 351)
Name: NF11374_low_24
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 1640123 - 1640452
Alignment:
| Q |
1 |
tttgtcagaattctacatcctcaaagacaataaaagctgaaattttggacttggagaaactataaactccaagtatatatatagagtactcgagggtatg |
100 |
Q |
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| T |
1640123 |
tttgtcagaattctacatcctcaaacacaataaaagctgaaattttggacttggagaaactataaactccaagtata----tagagtactcgagggtatg |
1640218 |
T |
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| Q |
101 |
taatgaatatttatcgatattaattttaaaactaaaagttggagtttgagaaacttgtaaataggattaaagctgcaatgattaagtagtattatagtat |
200 |
Q |
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| T |
1640219 |
taatgaatatttatcgatattatttttaaaactaaaagttggagtttgagaaacttgtaaataggattaaagctgcaatgattaagtagtattatagtat |
1640318 |
T |
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| Q |
201 |
attggatcattaaatttaaggccttaactaatgtccaaaactatagtttaaccaagaaaagggtaatctgtataaccgagaaccggatcagatgtgtaga |
300 |
Q |
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| T |
1640319 |
attggatcattaaatttaaggccttaactaatgtccaaaactatagtttaaccaagaaaagggtagtctgtataaccgagaaccggatcagatgtgtaga |
1640418 |
T |
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| Q |
301 |
atgtttcccggttatacttgttgagaggagcatc |
334 |
Q |
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| T |
1640419 |
atgtttcccggttatacttgttgagaggagcatc |
1640452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 1071914 - 1071833
Alignment:
| Q |
253 |
caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatc |
334 |
Q |
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| T |
1071914 |
caagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatc |
1071833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 1053830 - 1053750
Alignment:
| Q |
253 |
caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcat |
333 |
Q |
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| T |
1053830 |
caagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcat |
1053750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 1059095 - 1059015
Alignment:
| Q |
253 |
caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcat |
333 |
Q |
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| T |
1059095 |
caagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcat |
1059015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 1034185 - 1034107
Alignment:
| Q |
253 |
caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagc |
331 |
Q |
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| T |
1034185 |
caagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagc |
1034107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 1066187 - 1066106
Alignment:
| Q |
253 |
caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatc |
334 |
Q |
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| T |
1066187 |
caagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatc |
1066106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 1044544 - 1044492
Alignment:
| Q |
281 |
aaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcat |
333 |
Q |
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| T |
1044544 |
aaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcat |
1044492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 1047158 - 1047078
Alignment:
| Q |
253 |
caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcat |
333 |
Q |
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| T |
1047158 |
caagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcat |
1047078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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