View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_25 (Length: 349)
Name: NF11374_low_25
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 35294222 - 35294557
Alignment:
| Q |
1 |
tctaagaaaggaatatagtg-----acatgcacttgttcgaataccactcttatagaatatatggatattggattagtatgaatcatgacgcccattaaa |
95 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
35294222 |
tctaagaaaggaatatagtgtaataacatgcacttgttcgaataccactcttatagaatatagggatattggattagtatgaatcatgacgcccaataaa |
35294321 |
T |
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| Q |
96 |
ttgggtcatttgacatttgatttcgtcattgtcaaacaacatgcatccatctaatatcataaatcttatatgtgatttatctagagaaaaactatataat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35294322 |
ttgggtcatttgacatttgatttcgtcattgtcaaacaacatgcatccatctaatatcataaatcttatatgtgatttatctagagaaaaactatataat |
35294421 |
T |
|
| Q |
196 |
aaaatcgaaatatatcttttaaattaaatctatctatatgaagcgtggcatgtgataagaaaaataatcatttagtttgtggcttgtcttttcgagcaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35294422 |
aaaatcgaaatatatcttttaaattaaatctatctatatgaagcgtggcatgtgataagaaaaataatcatttagtttgtggcttgtcttttcgagcaaa |
35294521 |
T |
|
| Q |
296 |
gtgtcttttagggaagcaaaagcatatcaatctctt |
331 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35294522 |
gtgtcttttagggaagcaaaagcatatcaatctctt |
35294557 |
T |
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