View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_27 (Length: 343)
Name: NF11374_low_27
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 2522834 - 2522646
Alignment:
| Q |
11 |
gagagaagaatgattgtgaagaaaaactgtatggaaaggaaaaatatagtgatgagaatgtatgataatagtgtgtgtcagatttaatccaatgatcgaa |
110 |
Q |
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| T |
2522834 |
gagagaagaatgattgtgaagaaaaactgtatggaaagaaaaaatatagtgatgagaatgtatgataatagtgtgtatcagatttaatccaatgatcgaa |
2522735 |
T |
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| Q |
111 |
atcaattttcctatgatggaaaacaattacccttttcaatgctaaactcaaaaatcacatcatgttcttatctttctttcccacttctc |
199 |
Q |
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| T |
2522734 |
atcaactttcctatgatggaaaacaattaccctttcccatgctaaacctgaaaatcacatcatgttcttatctttctttcccacttctc |
2522646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 2503667 - 2503542
Alignment:
| Q |
200 |
tgaaccattttttctaccaacaccttgaccaacagataatatcattaaattaaaacaccaacaaactatttagtccaaattatgaaattaatgaatgaaa |
299 |
Q |
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| T |
2503667 |
tgaaccattttttctaccaacaccttgaccaacagataatatcattaaattaaaacaccaaccaactatttagtccaaattatgaaattaatgaatgaaa |
2503568 |
T |
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| Q |
300 |
ttgaaggctgcaaccaaagctatttc |
325 |
Q |
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| T |
2503567 |
ttgaaggccgcaaccaaagctatttc |
2503542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 32894405 - 32894494
Alignment:
| Q |
12 |
agagaagaatgattgtgaagaaaaactgtatggaaaggaaaaatatagtgatgagaatgtatgataatagtgtgtgtcagatttaatccaatg |
104 |
Q |
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| T |
32894405 |
agagaagaatggttgtggagaaagattgtatgaaaat---aaatatagtgatgagaatgtatgataatagtgtgtgtcagatttaatccaatg |
32894494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 49346955 - 49347007
Alignment:
| Q |
52 |
aaatatagtgatgagaatgtatgataatagtgtgtgtcagatttaatccaatg |
104 |
Q |
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| T |
49346955 |
aaatatagtgatgagaatgtatgataatagtgtgtgtcagatttaatccaatg |
49347007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 17947641 - 17947730
Alignment:
| Q |
12 |
agagaagaatgattgtgaagaaaaactgtatggaaaggaaaaatatagtgatgagaatgtatgataatagtgtgtgtcagatttaatccaatg |
104 |
Q |
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| T |
17947641 |
agagaagaatggttgtggagaaagattgtatgaaaat---aaatatagtgatgagaatgtatgataatagtgtgtgtcagatttaatccaatg |
17947730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 42607814 - 42607854
Alignment:
| Q |
117 |
tttcctatgatggaaaacaattacccttttcaatgctaaac |
157 |
Q |
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| T |
42607814 |
tttcctatgatgggaaacaattccccttttccatgctaaac |
42607854 |
T |
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