View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11374_low_28 (Length: 326)

Name: NF11374_low_28
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11374_low_28
NF11374_low_28
[»] chr7 (1 HSPs)
chr7 (15-307)||(12011902-12012194)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 12011902 - 12012194
Alignment:
Q  15 agaacaagctttgaggagaaaagggaaagtgtgtttaccagggatagcaccgtgtctacgcatttgaatgtaaagggagagagaaatgcggggttgttgt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  12011902 agaacaagctttgaggagaaaagggaaagtgtgtttaccagggataacaccgtgtctacgcatttgaatgtaaagggaaagagaaatgtggggctgttgt 12012001  T
Q  115 tgttgatgagcgcggatgagagtgttccacatgaatgaattgggtttgtgtaaggaggagaagattctagaagcgtgttcgaggttaccgaaaggggaga 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12012002 tgttgatgcgcgcggatgagagtgttccacatgaatgaattgggtttgtgtaaggaggagaagattctagaagcgtgttcgaggttaccgaaaggggaaa 12012101  T
Q  215 gagcaaaagaggagaataaacggcttgtggcgaattggtcgttgatgcgggatgtgatgatcatttgagcgtggatttgtttgaggtgttgta 307  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012102 gagcgaaagaggagaataaacggcttgtggcgaattggtcgttgatgcgggatgtgatgatcatttgagcgtggatttgtttgaggtgttgta 12012194  T

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