View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_29 (Length: 319)
Name: NF11374_low_29
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 39005382 - 39005668
Alignment:
| Q |
18 |
agttctatcaggaaattcactcaccggaccaataccagccgagctgtctttgtgcaataaacttgcttacattgatttaaacagtaatcttctttatgga |
117 |
Q |
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| T |
39005382 |
agttctatcaggaaattcactcaccggaccaataccagccgagctgtctttgtgcaataaacttgcttacattgatttaaacagtaatcttctttatgga |
39005481 |
T |
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| Q |
118 |
caaataccatcatggctgggaaaattacctcagttaggagagcttaagctctcctccaacaatttttccggacctcttccattaggcctattcaaatgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39005482 |
caaataccatcatggctgggaaaattacctcagttaggagagcttaagctctcctccaacaatttttccggacctcttccattaggcctattcaaatgtt |
39005581 |
T |
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| Q |
218 |
ccaatttactagttctctctctgaatgaaaactcactcaatggaagcctcccagctgatattggtgatcttacatatcttgatgtcc |
304 |
Q |
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| T |
39005582 |
ccaatttactagttctctctctgaatgaaaactcactcaatggaagcctcccagctgatattggtgatcttacatatcttaatgtcc |
39005668 |
T |
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Back To:
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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 14882408 - 14882293
Alignment:
| Q |
25 |
tcaggaaattcactcaccggaccaataccagccgagctgtctttgtgcaataaacttgcttacattgatttaaacagtaatcttctttatggacaaatac |
124 |
Q |
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|||||||||||||||| ||||||||||||| || || |||||||| || |||||||| | |||||||||| || ||| || ||| ||| ||| ||| |
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| T |
14882408 |
tcaggaaattcactcataggaccaataccagatgaactatctttgtgtaacaaacttgcctctattgatttaagcaataacctacttgttggtcaagtac |
14882309 |
T |
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| Q |
125 |
catcatggctgggaaa |
140 |
Q |
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| T |
14882308 |
cagcatggcttggaaa |
14882293 |
T |
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