View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_32 (Length: 299)
Name: NF11374_low_32
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 15447323 - 15447064
Alignment:
| Q |
24 |
gagaccacaaaatattttgattcaaatgtgcaaggcaaacatttgaattgaataaaagtcttacaaaaggannnnnnnnattt----attaaattgggat |
119 |
Q |
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| T |
15447323 |
gagaccacaaaatattttgattaaaaagtgcaaggcaaacattttaattgaatcaaagtcttacaaaaggattttttatttttttttattaaattgggat |
15447224 |
T |
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| Q |
120 |
aacaaggcacacctaactttatacaaatgcaaaggttcatacagtggcagaaccagaaataaatcaatgagggggccatttgcttaatgtatatgtattt |
219 |
Q |
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| T |
15447223 |
aacaaggtacacctaactttatactaatgcaaaggttcatacagtggcggagtcagaaataaatcaatgagagggccatttgcttaatgtatatgtattt |
15447124 |
T |
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| Q |
220 |
gttttgaacatattcgtacttgtcaagttgtaggcatagtcatttaaatcattgggttttg |
280 |
Q |
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| T |
15447123 |
gttttgaacatattcggacttgtc-agttgtaggcatagttgtttaaatcattggattttg |
15447064 |
T |
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