View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_33 (Length: 287)
Name: NF11374_low_33
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 44531347 - 44531623
Alignment:
| Q |
11 |
cagagataccttcaagtgaaatataataaaaagatggttgcaatggatttgtgataagtggtgttgttacctgttttgtggcattaacatttggaagaga |
110 |
Q |
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| T |
44531347 |
cagagataccttcaagtgaaatataataaaaagatggttgcaatggatttgtgataagtggtgttgttacctgttttgtggcattaacatttggaagaga |
44531446 |
T |
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| Q |
111 |
acctaacaaaagaacactttgttttgtgtcatccattgaggttaaacaataagagaatttttgttcttttaattgagaaaccaaagataaaggtccacgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |
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| T |
44531447 |
acctaacaaaagaacactttgttttgtgtcatccattgaggttaaacaataagagaattcttgttcttgtaattgagaaaccaaagataaaggaccacgt |
44531546 |
T |
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| Q |
211 |
cctaatccaaccaaccctgaagcttgttcaaacccttttccttcattgtcttcaccacaaccaacatcaatgttttt |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
44531547 |
cctaatccaaccaaccctgaagcttgttcaaacccttttccttcattgtcttcaccacaaccaaaaccaatgttttt |
44531623 |
T |
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