View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_36 (Length: 273)
Name: NF11374_low_36
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 3637075 - 3636827
Alignment:
| Q |
16 |
aattattcctttctagatcactttgtaatgaaagcctttccattctcctctggctactttgacacaaagctggaattccattatacacagatgtaaaaag |
115 |
Q |
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| T |
3637075 |
aattattcctttctagatcactttgtgatgaaagcctttccattctcctctggctactttgacacaaagctggaattccattatacacagatgtaaaaag |
3636976 |
T |
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| Q |
116 |
ccaatactccacccaaacagaagcactattccaaagtgctaatgttatagcagatgctttaagagatacaaagcttattatgaagccagttataacaggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636975 |
ccaatactccacccaaacagaagcactattccaaagtgctaatgttatagcagatgctttaagagatacaaagcttattatgaagccagttataacaggt |
3636876 |
T |
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| Q |
216 |
gcaagtagcttgcaggttagatcgatgcgtctcgtaactgaattcatct |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3636875 |
gcaagtagcttgcaggttagatcgatgcgtctcgtaactgaattcatct |
3636827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 3646349 - 3646100
Alignment:
| Q |
15 |
aaattattcctttctagatcactttgtaatgaaagcctttccattctcctctggctactttgacacaaagctggaattccattatacacagatgtaaaaa |
114 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||| ||||||||| |||||||||||||||||| |
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| T |
3646349 |
aaattgttcctttctagatcactttgtgatgaaagcctttccattctcctctggccacttcgacgcaaagcaggaattccactatacacagatgtaaaaa |
3646250 |
T |
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| Q |
115 |
gccaatactccacccaaacagaagcactattccaaagtgctaatgttatagcagatgctttaagagatacaaagcttattatgaagccagttataacagg |
214 |
Q |
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||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||| |
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| T |
3646249 |
gccaatactccacccaaacagaaacaccattccaaagtgccagtgttatagcagatgctttaagggatacaaagcttattataaaaccagttaagacagg |
3646150 |
T |
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| Q |
215 |
tgcaagtagcttgcaggttagatcgatgcgtctcgtaactgaattcatct |
264 |
Q |
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||| || || |||||||||||||| || |||||||||||||||||||||| |
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| T |
3646149 |
tgcgaggagtttgcaggttagatcaatccgtctcgtaactgaattcatct |
3646100 |
T |
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