View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11374_low_37 (Length: 271)

Name: NF11374_low_37
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11374_low_37
NF11374_low_37
[»] chr7 (19 HSPs)
chr7 (2-271)||(26762932-26763201)
chr7 (2-91)||(7486526-7486615)
chr7 (2-91)||(21161223-21161311)
chr7 (29-91)||(5925523-5925585)
chr7 (2-119)||(9135382-9135499)
chr7 (4-91)||(12644766-12644853)
chr7 (3-90)||(39879369-39879456)
chr7 (3-72)||(5863187-5863256)
chr7 (2-91)||(10287617-10287706)
chr7 (3-91)||(9867961-9868049)
chr7 (2-90)||(13292144-13292232)
chr7 (29-90)||(1979044-1979105)
chr7 (29-91)||(18773962-18774024)
chr7 (37-67)||(27803373-27803403)
chr7 (42-91)||(2226624-2226673)
chr7 (2-67)||(5929032-5929097)
chr7 (14-91)||(9573459-9573536)
chr7 (2-91)||(16987113-16987202)
chr7 (47-91)||(26562898-26562942)
[»] chr1 (26 HSPs)
chr1 (2-165)||(26977647-26977810)
chr1 (2-91)||(12177367-12177456)
chr1 (2-91)||(34273068-34273157)
chr1 (2-88)||(52565564-52565650)
chr1 (2-67)||(5671775-5671840)
chr1 (2-91)||(22414756-22414845)
chr1 (2-82)||(33101528-33101608)
chr1 (6-91)||(16050375-16050460)
chr1 (2-90)||(14255051-14255139)
chr1 (29-177)||(23280308-23280456)
chr1 (36-91)||(4601542-4601597)
chr1 (2-91)||(16030376-16030465)
chr1 (2-91)||(25408077-25408166)
chr1 (2-91)||(48637532-48637621)
chr1 (29-91)||(21098893-21098955)
chr1 (2-91)||(1659810-1659899)
chr1 (29-118)||(21682638-21682727)
chr1 (2-90)||(5459730-5459817)
chr1 (29-88)||(3590811-3590870)
chr1 (137-184)||(5459843-5459890)
chr1 (37-91)||(18246124-18246178)
chr1 (2-91)||(16299595-16299684)
chr1 (31-88)||(16522759-16522816)
chr1 (140-181)||(33101645-33101686)
chr1 (148-184)||(22414663-22414699)
chr1 (40-88)||(30732501-30732549)
[»] chr4 (19 HSPs)
chr4 (2-91)||(12683766-12683855)
chr4 (2-177)||(29156997-29157172)
chr4 (1-91)||(15514581-15514671)
chr4 (2-84)||(19809689-19809771)
chr4 (2-90)||(47253259-47253347)
chr4 (41-91)||(3981931-3981981)
chr4 (29-86)||(13171065-13171122)
chr4 (2-90)||(15742174-15742262)
chr4 (31-91)||(17110679-17110739)
chr4 (29-119)||(13896527-13896617)
chr4 (5-91)||(14003088-14003174)
chr4 (2-86)||(14602036-14602120)
chr4 (6-89)||(10981849-10981932)
chr4 (29-84)||(16012519-16012574)
chr4 (145-179)||(12683679-12683713)
chr4 (2-88)||(19643686-19643772)
chr4 (37-83)||(34980851-34980897)
chr4 (36-88)||(5518524-5518576)
chr4 (41-89)||(35043188-35043236)
[»] chr6 (25 HSPs)
chr6 (2-184)||(14080372-14080553)
chr6 (2-91)||(19305445-19305534)
chr6 (2-175)||(33596758-33596931)
chr6 (2-91)||(30680973-30681062)
chr6 (6-106)||(34187265-34187365)
chr6 (2-92)||(18147286-18147376)
chr6 (6-91)||(9277325-9277410)
chr6 (2-179)||(19331701-19331878)
chr6 (37-91)||(9292075-9292129)
chr6 (2-175)||(20148214-20148385)
chr6 (2-175)||(22184443-22184614)
chr6 (1-89)||(16343562-16343650)
chr6 (2-90)||(31295556-31295644)
chr6 (2-88)||(22497319-22497405)
chr6 (1-90)||(12449603-12449692)
chr6 (6-67)||(25008415-25008476)
chr6 (29-89)||(12424362-12424422)
chr6 (1-67)||(9403177-9403243)
chr6 (29-91)||(13823425-13823487)
chr6 (5-63)||(14268440-14268498)
chr6 (14-72)||(19730624-19730682)
chr6 (2-67)||(3404883-3404948)
chr6 (40-89)||(12488055-12488104)
chr6 (2-62)||(689878-689938)
chr6 (2-90)||(27860969-27861057)
[»] chr8 (19 HSPs)
chr8 (2-73)||(30477640-30477711)
chr8 (29-186)||(5859707-5859858)
chr8 (2-176)||(24507354-24507527)
chr8 (7-91)||(23269227-23269311)
chr8 (4-83)||(3459507-3459586)
chr8 (2-73)||(21416737-21416808)
chr8 (29-90)||(17927752-17927813)
chr8 (2-89)||(24576604-24576691)
chr8 (2-84)||(13754746-13754828)
chr8 (2-65)||(6928111-6928174)
chr8 (2-88)||(26916919-26917005)
chr8 (2-91)||(18322924-18323013)
chr8 (31-91)||(14666889-14666949)
chr8 (2-58)||(24070866-24070922)
chr8 (136-179)||(30477555-30477598)
chr8 (2-84)||(13764977-13765059)
chr8 (36-90)||(15058017-15058071)
chr8 (137-179)||(26917033-26917075)
chr8 (140-176)||(6928213-6928249)
[»] chr2 (23 HSPs)
chr2 (2-91)||(12127684-12127773)
chr2 (6-90)||(45714977-45715061)
chr2 (2-89)||(36267481-36267568)
chr2 (2-91)||(12168953-12169043)
chr2 (2-84)||(27846540-27846622)
chr2 (2-91)||(20120328-20120417)
chr2 (2-90)||(15825136-15825224)
chr2 (29-88)||(24157354-24157413)
chr2 (2-65)||(24499796-24499859)
chr2 (2-91)||(3586344-3586433)
chr2 (2-91)||(10923186-10923275)
chr2 (2-88)||(18770296-18770384)
chr2 (31-91)||(29710999-29711059)
chr2 (2-91)||(45258173-45258262)
chr2 (34-90)||(148721-148777)
chr2 (29-91)||(24318894-24318956)
chr2 (2-88)||(24755452-24755538)
chr2 (37-91)||(28426178-28426232)
chr2 (136-174)||(45714914-45714952)
chr2 (2-91)||(19050456-19050545)
chr2 (38-90)||(12634828-12634880)
chr2 (2-90)||(19919087-19919175)
chr2 (37-73)||(26713591-26713627)
[»] scaffold0360 (1 HSPs)
scaffold0360 (2-91)||(13903-13992)
[»] scaffold0023 (1 HSPs)
scaffold0023 (2-91)||(95831-95920)
[»] chr5 (19 HSPs)
chr5 (2-91)||(22903074-22903163)
chr5 (29-91)||(26348127-26348189)
chr5 (2-91)||(25537386-25537475)
chr5 (29-91)||(18799761-18799823)
chr5 (39-88)||(26163619-26163668)
chr5 (2-179)||(26994627-26994804)
chr5 (6-91)||(8938893-8938978)
chr5 (2-91)||(27083259-27083347)
chr5 (138-179)||(32418643-32418684)
chr5 (3-91)||(25333716-25333804)
chr5 (2-81)||(19993186-19993265)
chr5 (148-191)||(25333616-25333659)
chr5 (138-184)||(22903002-22903048)
chr5 (2-88)||(24647272-24647358)
chr5 (137-174)||(8938829-8938866)
chr5 (2-91)||(20025264-20025353)
chr5 (37-117)||(4477153-4477233)
chr5 (20-88)||(19846053-19846121)
chr5 (136-172)||(19993299-19993335)
[»] chr3 (18 HSPs)
chr3 (2-67)||(17143770-17143835)
chr3 (2-89)||(9801105-9801191)
chr3 (29-91)||(21649394-21649456)
chr3 (2-91)||(21342308-21342397)
chr3 (36-184)||(8122969-8123117)
chr3 (2-91)||(1770806-1770895)
chr3 (2-90)||(12516167-12516255)
chr3 (37-84)||(9007832-9007879)
chr3 (2-67)||(28723795-28723860)
chr3 (2-63)||(30606937-30606998)
chr3 (2-91)||(431337-431426)
chr3 (38-91)||(1475730-1475783)
chr3 (2-67)||(16704407-16704472)
chr3 (2-91)||(17485645-17485734)
chr3 (2-71)||(28715509-28715573)
chr3 (37-66)||(35314178-35314207)
chr3 (2-90)||(2311855-2311943)
chr3 (140-184)||(28715621-28715665)
[»] scaffold0205 (2 HSPs)
scaffold0205 (2-118)||(10936-11052)
scaffold0205 (29-89)||(22869-22929)
[»] scaffold0174 (1 HSPs)
scaffold0174 (36-177)||(29331-29472)
[»] scaffold0022 (1 HSPs)
scaffold0022 (38-90)||(69281-69333)
[»] scaffold0291 (2 HSPs)
scaffold0291 (2-193)||(8598-8788)
scaffold0291 (2-66)||(15451-15515)
[»] scaffold0013 (1 HSPs)
scaffold0013 (40-90)||(4483-4533)
[»] scaffold0505 (1 HSPs)
scaffold0505 (2-91)||(7866-7955)
[»] scaffold0103 (1 HSPs)
scaffold0103 (5-86)||(40782-40863)
[»] scaffold0140 (1 HSPs)
scaffold0140 (2-89)||(6281-6368)
[»] scaffold0074 (1 HSPs)
scaffold0074 (2-85)||(35240-35323)
[»] scaffold0294 (1 HSPs)
scaffold0294 (2-64)||(264-326)
[»] scaffold0263 (1 HSPs)
scaffold0263 (5-91)||(20521-20607)
[»] scaffold0054 (1 HSPs)
scaffold0054 (2-66)||(68823-68885)
[»] scaffold0005 (1 HSPs)
scaffold0005 (2-86)||(215258-215342)
[»] scaffold0034 (1 HSPs)
scaffold0034 (37-91)||(18526-18580)
[»] scaffold0518 (1 HSPs)
scaffold0518 (29-89)||(8954-9013)
[»] scaffold0092 (1 HSPs)
scaffold0092 (37-89)||(21674-21726)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 26762932 - 26763201
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||    
T  26762932 cacaacactttctacacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgcctgcaagaacctttcgctccaccgcaaggattta 26763031  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcaccggatagattaattatcattgtccaa 201  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26763032 tcaccgccgtaccggaaatcgttgccctaatacaggagcactttccgtcatcgttgccactcatccatcctcaccggacagattaattatcattgtccaa 26763131  T
Q  202 tgtcatgcaagagcatcataacctcattgttgataccatacacaaccagaaatcaagtattatcacattc 271  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26763132 tgtcatgcaacagcatcataacctcattgttgataccatacacaaccagaaatcaagtattatcacattc 26763201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 7486615 - 7486526
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||| ||||||||  ||||| | |||||| ||||||| |||||||||||||||||||||||| |||| | ||||||| ||||||||    
T  7486615 cacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgctaacgtgcctgcatgcacctttcattccaccg 7486526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 21161311 - 21161223
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| | |||| | || ||| |||||||||||||||||||||||||||||||| |||| ||  ||||||||||||||    
T  21161311 cacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgca-gacactttcgttccaccg 21161223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 5925523 - 5925585
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||    
T  5925523 agttccattactgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 5925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 9135382 - 9135499
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    ||||||| ||| ||||| |||||| | | |||| ||||||||||||||||| |||||||||||||| |  | | ||||||||||||||||  | || |||    
T  9135382 cacaacagtttttacacactctttctcaattccattactgacttgagcgttagagtgctaacgtgcctatatgcacctttcgttccaccgtgaagactta 9135481  T
Q  102 tcaccgccgtaccggaaa 119  Q
     ||||||||||| |||||    
T  9135482 acaccgccgtactggaaa 9135499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 12644853 - 12644766
Alignment:
Q  4 caacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||| |||| || ||| | |||||| |||||||| ||||||| ||||||||||| ||| |||| | ||||||||||||||||    
T  12644853 caacactttccacacactttttctcagttccattactgacctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccg 12644766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 39879456 - 39879369
Alignment:
Q  3 acaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||||||| ||||| |||||| | |||| | |||||||||||||||||  |||| |||||||  |||||| |||||||||||||||    
T  39879456 acaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccacc 39879369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 5863256 - 5863187
Alignment:
Q  3 acaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgca 72  Q
    |||||| ||||||||| |||||| | |||||  ||||||||||||||||| |||||||||||||| ||||    
T  5863256 acaacattttctacacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgcttgca 5863187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 10287617 - 10287706
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  ||||| || ||| | || ||| |||||||||||||||||   |||||||||||| ||||||||||||| |||||||||    
T  10287617 cacaacacttcttacacactttttctcagatccattactgacttgagcgttaaggtgctaacgtgcctgcaggaacctttggttccaccg 10287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 9867961 - 9868049
Alignment:
Q  3 acaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||||||  |||||  | |||||| ||||||||||||||||  |||||||||||| | |||| | ||||||||| ||||||    
T  9867961 acaacactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacctttcgtcccaccg 9868049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 13292144 - 13292232
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||  ||||| |||||| | |||| | ||||||||||||||||| |||||||||||| | |||||  ||||||| |||||||    
T  13292144 cacaacacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtacctgcagacacctttccttccacc 13292232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 1979105 - 1979044
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||| ||||||||||||||||  |||| ||||||||| |||||| |||||||||| ||||    
T  1979105 agttccattactgacttgagcgtcagagtactaacgtgcttgcaggcacctttcgtttcacc 1979044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 18774024 - 18773962
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| ||||||| |||| ||| | ||||||||||||| |||| | ||||||||||||||||    
T  18774024 agttccattactgatttgatcgtcgaagtgctaacgtgcctgcatgcacctttcgttccaccg 18773962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 27803403 - 27803373
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgc 67  Q
    |||||||||||||||||||||||||||||||    
T  27803403 tactgacttgagcgttggagtgctaacgtgc 27803373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 2226673 - 2226624
Alignment:
Q  42 acttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||||||| |||| |||||  ||||||||| ||||||    
T  2226673 acttgagcgttggagtgctaatgtgcctgcagacacctttcgtcccaccg 2226624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 5929032 - 5929097
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    ||||||||||  ||||| |||| | | |||||| ||||||||||||| ||||||||||||| ||||    
T  5929032 cacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgtgc 5929097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 9573459 - 9573536
Alignment:
Q  14 tacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||| |||||| | ||||||  || ||||||| |||||||||||||||||||| |||||| |||  | |||||||||    
T  9573459 tacacactctttctcagttcccatattgacttgtgcgttggagtgctaacgtgcctgcaggcaccccttgttccaccg 9573536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 16987113 - 16987202
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  ||||| |||||| | | |||| |||||| |||||| ||  ||||||||||||||  ||| | ||||||||||||||||    
T  16987113 cacaacacttcttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccg 16987202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 26562942 - 26562898
Alignment:
Q  47 agcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||||||| |||| |||||  ||||||||||||||||    
T  26562942 agcgttggagtgctaatgtgcctgcagacacctttcgttccaccg 26562898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 26977810 - 26977647
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    ||||| ||||||||||| |||||| |  ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || |||| |    
T  26977810 cacaatactttctacacactctttctcggttccattactgacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattca 26977711  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcat 165  Q
    ||||||| ||||||||||  ||| |  | |||    ||||||||||||||||||||||||||||    
T  26977710 tcaccgctgtaccggaaaccgttactgtcataccatagcactttccgccaccgttgccactcat 26977647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 12177456 - 12177367
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | |||||| ||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||    
T  12177456 cacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttccaccg 12177367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 34273157 - 34273068
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | |||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||    
T  34273157 cacaacactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgcttgcaggtacctttcgtcccaccg 34273068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 52565650 - 52565564
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||||||  |||||||||||||  |||||| |||||||||||||    
T  52565650 cacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttcca 52565564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 5671840 - 5671775
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    ||||||||||||||||| |||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  5671840 cacaacactttctacacactctttctcagttccattactaacttgagcgttggagtgctaacgtgc 5671775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 22414845 - 22414756
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| || ||| | |||| | ||||||||||||||||  |||||||||||||| ||| || ||||||||||||||||    
T  22414845 cacaacactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccaccg 22414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 33101528 - 33101608
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttc 82  Q
    ||||||||||||||||| || ||| | |||||| |||| ||||||||||||||||||||||||||| |||| | |||||||    
T  33101528 cacaacactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatgcacctttc 33101608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 16050460 - 16050375
Alignment:
Q  6 acactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||| |||||| | |||||| | | |||||||||||||||||||||||||||| |||||  |||||||  |||||||    
T  16050460 acactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgcagatacctttctatccaccg 16050375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 14255051 - 14255139
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||  ||||| |||||| | |||| | ||| |||||||||||||||||||||| ||||| |||||| ||| |||||||||||    
T  14255051 cacaacacttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccacc 14255139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 23280308 - 23280456
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcaccgccgtaccggaaattgttgccc 128  Q
    |||||| ||||||||||||| ||| ||||| |||| ||  |||||| ||||||||||||| |  ||||||| ||||||  | |||||||||  ||  ||     
T  23280308 agttccattactgacttgagagtttgagtgataacatgtctgcaggcacctttcgttccatcacaaggattcatcaccaacataccggaaaccgtcaccg 23280407  T
Q  129 taatataggagcactttccgccaccgttgccactcatccatcctcaccg 177  Q
    |   |   ||||||||||||||||||||||||||||| |||||||||||    
T  23280408 tctcaccagagcactttccgccaccgttgccactcattcatcctcaccg 23280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 4601542 - 4601597
Alignment:
Q  36 ttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||||||| ||||||||||||||| |||||  ||||||||||||||||    
T  4601542 ttactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccg 4601597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 16030465 - 16030376
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||  | |||||| |||||||||||||| || || || |||||||| |||||  ||||||| ||||||||    
T  16030465 cacaacactttctacacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgcagacacctttcattccaccg 16030376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 25408166 - 25408077
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  ||||| |||| | | |||| | |||||||||||||| ||||||||||||||||  |||||| ||||||| ||||||||    
T  25408166 cacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgcaggcacctttcattccaccg 25408077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 48637621 - 48637532
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  |||| ||||| | | |||||| ||||||||||||||||  ||||||| |||||| |||||| ||||||||||| ||||    
T  48637621 cacaacacttcttacatcctctctttcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccg 48637532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 21098893 - 21098955
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| |||||||||||| ||| |||||||||| |||| |||||  ||||||||||||||||    
T  21098893 agttccattactgacttgatcgtcggagtgctaatgtgcctgcagccacctttcgttccaccg 21098955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 1659810 - 1659899
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  |||||  ||||| | || ||| ||| ||||||||||||||||||| ||||||| ||| ||  ||||||||||||||||    
T  1659810 cacaacacttcttacacattctttctcagatccattattgacttgagcgttggagtgataacgtgtatgtagacacctttcgttccaccg 1659899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 21682638 - 21682727
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcaccgccgtaccggaa 118  Q
    |||||| |||||||||||||||||||||||| ||||| | |  ||| |||||||||||||| | |  || | ||| ||||||||||||||    
T  21682638 agttccattactgacttgagcgttggagtgcaaacgtacctataggcacctttcgttccacagcagagactcatcgccgccgtaccggaa 21682727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 5459730 - 5459817
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||||||||| |||||| | ||| || ||||||  |||| ||||||||||||||||| | |||| | ||||||||| |||||    
T  5459730 cacaacactttctacacactctttctcagt-ccgttactgttttgaacgttggagtgctaacgtacctgcatgcacctttcgtcccacc 5459817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 3590870 - 3590811
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    |||||| |||||||||||| ||| |||||||||| |||| |||| | |||||||||||||    
T  3590870 agttccattactgacttgatcgtcggagtgctaaggtgcctgcatgcacctttcgttcca 3590811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 5459843 - 5459890
Alignment:
Q  137 gagcactttccgccaccgttgccactcatccatcctcaccggatagat 184  Q
    |||||| |||||||| ||| ||| ||||||||||||||||||||||||    
T  5459843 gagcacattccgccatcgtcgcctctcatccatcctcaccggatagat 5459890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 18246178 - 18246124
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| ||||||||||||||||| |||||||| | |||  ||||||||||||||||    
T  18246178 tactcacttgagcgttggagtgttaacgtgcttacagacacctttcgttccaccg 18246124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 16299595 - 16299684
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  ||| | |||||| | |||| | ||||| |||||| ||| |||||||||| ||||||||||  || |||||||||||||    
T  16299595 cacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccg 16299684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 16522816 - 16522759
Alignment:
Q  31 ttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    |||||||| |||||||| ||||| ||||||||||||| | |||  |||||||||||||    
T  16522816 ttcctttattgacttgaacgttgaagtgctaacgtgccttcagacacctttcgttcca 16522759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 33101645 - 33101686
Alignment:
Q  140 cactttccgccaccgttgccactcatccatcctcaccggata 181  Q
    ||||||||||||  |||||| |||||||||||||||||||||    
T  33101645 cactttccgccagtgttgcctctcatccatcctcaccggata 33101686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 22414699 - 22414663
Alignment:
Q  148 gccaccgttgccactcatccatcctcaccggatagat 184  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  22414699 gccactgttgccactcatccatcctcaccggaaagat 22414663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 30732549 - 30732501
Alignment:
Q  40 tgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    |||||||||| ||||||||||||||||| |||||| ||| | |||||||    
T  30732549 tgacttgagcattggagtgctaacgtgcctgcaggcaccctccgttcca 30732501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 12683855 - 12683766
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | |||| | ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  12683855 cacaacactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccg 12683766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 29157172 - 29156997
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    |||||||||| |||||| || ||| | |||||| ||||| |||||||||||||||||| ||||||  |||| | |||||||||||||||| ||||||| |    
T  29157172 cacaacacttactacacactttttctcagttccattactaacttgagcgttggagtgcaaacgtgtctgcatgcacctttcgttccaccgcaaggattca 29157073  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcaccg 177  Q
    ||  |||| |||||||||   | ||  | | |  ||||||||||||  || ||||| |||||||||||||||||||    
T  29157072 tcgtcgccttaccggaaaccatcgctgtcacaccggagcactttccatcatcgttgtcactcatccatcctcaccg 29156997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15514581 - 15514671
Alignment:
Q  1 ccacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||  ||||| |||||| | |||||| |||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||    
T  15514581 ccacaacacttcttacacactctttttcagttccattactgacttgagcgttggagtgctaacgtgcctacaggcacccttcgttccaccg 15514671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 19809771 - 19809689
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgt 84  Q
    ||||||||||||||||| |||||| | |||| | |||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  19809771 cacaacactttctacacactctttcttagtttcattactgacttgagcgttggagtgctaacatgtctgcaggaacctttcgt 19809689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 47253347 - 47253259
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||| ||||| |||||| | |||||| |||||||||||||||||||||||||||| ||| |||| | |||||| || |||||    
T  47253347 cacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcaccttttgtcccacc 47253259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 3981981 - 3981931
Alignment:
Q  41 gacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  3981981 gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccg 3981931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 13171122 - 13171065
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttc 86  Q
    |||||| ||||||||||||| |||||||||||||||||| |||| | |||||||||||    
T  13171122 agttccattactgacttgagagttggagtgctaacgtgcctgcaagcacctttcgttc 13171065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 15742174 - 15742262
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||  ||||| || ||| | |||||| ||||||||||||||||  ||||||||||||||  ||||| |||||||| ||||||    
T  15742174 cacaacacttcttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccacc 15742262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 17110739 - 17110679
Alignment:
Q  31 ttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| |||||||||||| ||| ||||||||||||||| |||||| || |||||||||||||    
T  17110739 ttccattactgacttgatcgtcggagtgctaacgtgcttgcaggcacatttcgttccaccg 17110679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 13896527 - 13896617
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcaccgccgtaccggaaa 119  Q
    |||||| |||||| || ||||||| ||||| |||||||| |||||| ||| ||||||||| || || |  | |||||||||||||||||||    
T  13896527 agttcccttactggctagagcgtttgagtgataacgtgcttgcaggcacccttcgttccagcgcaaagtctcatcaccgccgtaccggaaa 13896617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 14003088 - 14003174
Alignment:
Q  5 aacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||| |||  |||||| | |||||| ||||||||||||||||   |||||||||||   | |||||||||||||||||||||    
T  14003088 aacactttccacaaactctttctcagttccattactgacttgagcgtcatagtgctaacgttgcttcaggaacctttcgttccaccg 14003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 14602036 - 14602120
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttc 86  Q
    ||||||||||  ||||| |||| | | |||| | |||||||||||||||||||| ||||||||||| |||||  | |||||||||    
T  14602036 cacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 14602120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 10981932 - 10981849
Alignment:
Q  6 acactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    ||||||| ||||| |||||| |  ||||| ||||||||||||| |||||||||| |||||   |||||| ||||||||| ||||    
T  10981932 acactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtcccac 10981849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 16012519 - 16012574
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgt 84  Q
    |||||| |||||||||||||||| |||||| |||||||| |||||| ||| |||||    
T  16012519 agttccattactgacttgagcgtcggagtgttaacgtgcctgcaggtaccattcgt 16012574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 12683713 - 12683679
Alignment:
Q  145 tccgccaccgttgccactcatccatcctcaccgga 179  Q
    ||||||||| |||||||||||||||||||||||||    
T  12683713 tccgccacctttgccactcatccatcctcaccgga 12683679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 19643772 - 19643686
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    ||||| ||||||||||| |||||| | |||||| |||||||||| ||||| ||| || |||||| | ||| || ||||| |||||||    
T  19643772 cacaagactttctacacactctttctcagttccattactgacttaagcgtcggattggtaacgtacctgcgggcaccttccgttcca 19643686  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 34980897 - 34980851
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcg 83  Q
    ||||||||| |||||||||||||  ||||||||||||| ||||||||    
T  34980897 tactgactttagcgttggagtgcggacgtgcatgcaggcacctttcg 34980851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 5518576 - 5518524
Alignment:
Q  36 ttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    |||||||||||||||||| ||||||||||||  ||||   |||||||||||||    
T  5518576 ttactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgttcca 5518524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 35043188 - 35043236
Alignment:
Q  41 gacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    ||||||||||||| ||||||||||||  |||||| ||| ||||||||||    
T  35043188 gacttgagcgttgaagtgctaacgtgtttgcagggacccttcgttccac 35043236  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 14080553 - 14080372
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    |||||||||| |||||| |||||| | ||||| || ||| ||||||||||  ||||||||| |||| || ||| ||||||||| |||||  ||| |||      
T  14080553 cacaacacttactacacactctttctcagttcatt-actaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgtcccaccacaagaattcg 14080455  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcaccggatagat 184  Q
    ||||||||||||||||||  ||  || | | || | |||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  14080454 tcaccgccgtaccggaaaccgtcaccatcacatcgaagcactttccgccaccattgtcactcatccatcctcactggatagat 14080372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 19305534 - 19305445
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||  | |||||| |||||||||||||||||  ||||||||||||| |  ||||||||||||||||||||    
T  19305534 cacaacactttctacacactcttactcagttccattactgacttgagcgtttaagtgctaacgtgcctctaggaacctttcgttccaccg 19305445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 33596931 - 33596758
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    ||||||||||||||||| || ||| | |||| | ||||||| ||||||||| ||||| ||| |||| |||||| |||||||||||||||| |||||||      
T  33596931 cacaacactttctacacactttttcttagtttcattactgagttgagcgttagagtgttaatgtgcctgcaggtacctttcgttccaccgcaaggattct 33596832  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcac 175  Q
    || |||||||| | |||    |  || | | |  |||||| |||||||||| ||||||||||||||||||||||    
T  33596831 tcgccgccgtatcagaagccttcaccgtcacactggagcattttccgccacggttgccactcatccatcctcac 33596758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 30681062 - 30680973
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||| || |||||||| |||||||| |||| | |||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||    
T  30681062 cacaatacattctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccg 30680973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 34187365 - 34187265
Alignment:
Q  6 acactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcac 105  Q
    ||||||| ||||| |||||| | |||||| ||||||||||||| ||||| |||||||||||  |||||  |||||||||||||||| || || |||||||    
T  34187365 acactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttccaccgcaaagacttatcac 34187266  T
Q  106 c 106  Q
    |    
T  34187265 c 34187265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 18147376 - 18147286
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccga 92  Q
    ||||||||||||||||| |||||| |  ||||| ||| ||||||||||||||||||| |||||| | | |||| |||||||||| ||||||    
T  18147376 cacaacactttctacacactctttctcggttccattagtgacttgagcgttggagtgttaacgttcctacaggcacctttcgtttcaccga 18147286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 9277325 - 9277410
Alignment:
Q  6 acactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||| ||||  |||||| | ||||||  ||||||||||||||||  ||||||||||||  |||||||||||||||||||||||    
T  9277325 acactttttacatactctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgcaggaacctttcgttccaccg 9277410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 19331701 - 19331878
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    |||||||||||||| || |||||| | |||||| |||||||||| ||||| ||||| ||||||| | |||| | ||||||||||||||||  | || |      
T  19331701 cacaacactttctatactctctttcttagttccattactgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccaccgcgaagactcg 19331800  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcaccgga 179  Q
    |||| ||| ||| ||||| |||  |  | | |   |||||||||| ||||||||||| |||||| |||||||||||||    
T  19331801 tcacagccatacaggaaactgtaactgtcacaccagagcactttctgccaccgttgcaactcattcatcctcaccgga 19331878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 9292075 - 9292129
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||||||| | |||||||||||| |||||| ||||||||||||||||    
T  9292075 tactgacttgagcgttagcgtgctaacgtgcttgcaggcacctttcgttccaccg 9292129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 20148385 - 20148214
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    |||||||||||||||||  ||||| | | |||| ||||| ||||||||| |||||||||||||||  |||| | || ||||||||||||| || || |      
T  20148385 cacaacactttctacac--tctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactcg 20148288  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcac 175  Q
    ||| | || |||| |||| |||   | | | |  |||||||||||||||| | |||||||||||||||||||||    
T  20148287 tcagccccataccagaaactgtcatcgtcacaccggagcactttccgccatcattgccactcatccatcctcac 20148214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 22184443 - 22184614
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    |||||||||||||||||  ||||| | | |||| ||||| ||||||||| |||||||||||||||  |||| | || ||||||||||||| || || |      
T  22184443 cacaacactttctacac--tctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactcg 22184540  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcac 175  Q
    ||| | || |||| |||| |||   | | | |  |||||||||||||||| | |||||||||||||||||||||    
T  22184541 tcagccccataccagaaactgtcatcgtcacaccggagcactttccgccatcattgccactcatccatcctcac 22184614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16343650 - 16343562
Alignment:
Q  1 ccacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    |||||||||||  |||||  ||| | | |||||| ||||||||||||| |||||||||||||||||| |||||| ||| |||| |||||    
T  16343650 ccacaacacttcttacactttctctctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccac 16343562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 31295556 - 31295644
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||  ||||| |||||| | |||| | |||||||||||||||| | ||||||||| ||| |||||| | |||||||||||||    
T  31295556 cacaacacttcatacacactctttctcagtttcattactgacttgagcgtcgaagtgctaacatgcctgcaggcaactttcgttccacc 31295644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 22497319 - 22497405
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    ||||||||||| || || |||| | |  ||||| |||||||||||||||| ||||||||||||||  |||| | |||||||||||||    
T  22497319 cacaacactttttatactctctctttctgttccattactgacttgagcgtcggagtgctaacgtgtctgcaagcacctttcgttcca 22497405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12449603 - 12449692
Alignment:
Q  1 ccacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||||||||  ||||| |||||| | || ||| ||||||||||||||||  |||||||||||||| | |||  ||||||||| |||||    
T  12449603 ccacaacacttcttacacactctttttcagctccattactgacttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccacc 12449692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 25008415 - 25008476
Alignment:
Q  6 acactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    ||||||| ||||| |||||| | | |||| ||||||||||||||||||||||| ||||||||    
T  25008415 acactttttacacactctttctcaattccattactgacttgagcgttggagtgttaacgtgc 25008476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 12424362 - 12424422
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    |||||| ||||||||||||  || | ||||||||||||| |||||| ||||||||||||||    
T  12424362 agttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttccac 12424422  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9403243 - 9403177
Alignment:
Q  1 ccacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    |||||||||||  ||||| |||||| | |||||| ||| |||||||||||| ||||| |||||||||    
T  9403243 ccacaacacttcttacacactctttctcagttccattattgacttgagcgtcggagttctaacgtgc 9403177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 13823425 - 13823487
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| |||||||||||| |||||||||||||||  || |||  | ||||||||||||||||    
T  13823425 agttccattactgacttgatcgttggagtgctaactagcttgccagcacctttcgttccaccg 13823487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 14268498 - 14268440
Alignment:
Q  5 aacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaac 63  Q
    |||||||||||||| || | | | |||||| |||||||||| |||||||||||||||||    
T  14268498 aacactttctacacactatgtcttagttccattactgacttcagcgttggagtgctaac 14268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 19730624 - 19730682
Alignment:
Q  14 tacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgca 72  Q
    ||||| |||||| | |||||| ||| |||||||||||||||||||||||| ||| ||||    
T  19730624 tacacactctttctcagttccattattgacttgagcgttggagtgctaacatgcctgca 19730682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 3404883 - 3404948
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    ||||||||||||||||| |||||| | |||||| |||||||||| || ||| ||||| ||| ||||    
T  3404883 cacaacactttctacacactctttctcagttccattactgacttaagtgttagagtgttaatgtgc 3404948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 12488055 - 12488104
Alignment:
Q  40 tgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    |||||| |||||| ||||||||||||||||||| | ||| ||||||||||    
T  12488055 tgacttcagcgttagagtgctaacgtgcatgcatgcacccttcgttccac 12488104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 689878 - 689938
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaa 62  Q
    ||||||||||| ||||| | |||| | |||||| |||||||||||||| ||| ||||||||    
T  689878 cacaacactttatacacacactttctcagttccattactgacttgagcattgcagtgctaa 689938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 27860969 - 27861057
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||  ||||| |||| | | |||||| ||||||||||||| ||| |||| ||||| ||| |||||  |||||| ||||||||    
T  27860969 cacaacacttcttacactctctctttcagttccattactgacttgagtgttagagtactaacatgcctgcagacaccttttgttccacc 27861057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 30477711 - 30477640
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcag 73  Q
    ||||||||||||||||| |||||| | |||| | ||||||||||||||||||||||||||||||||||||||    
T  30477711 cacaacactttctacacactctttctcagtttcgttactgacttgagcgttggagtgctaacgtgcatgcag 30477640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 5859858 - 5859707
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcaccgccgtaccggaaattgttgccc 128  Q
    |||||| ||| |||||||||||||||||||||||||||  |||||||| ||||||| ||||    |||| |  |||| || |||| ||||| |||  |      
T  5859858 agttccattattgacttgagcgttggagtgctaacgtgtctgcaggaatctttcgtcccactacgaggactcgtcacagctgtactggaaactgtcac-- 5859761  T
Q  129 taatataggagcactttccgccaccgttgccactcatccatcctcaccggatagatta 186  Q
        || |||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5859760 ----attggagcactttccaccaccgttgccactcatccatcctcaccggacagatta 5859707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 24507527 - 24507354
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    |||||||||||||| || |||||| | | |||| ||| |||||||| ||||||||| |||||||||||||||  |||||||| ||||||| || || | |    
T  24507527 cacaacactttctagacactctttctcatttccattattgacttgatcgttggagtactaacgtgcatgcagacacctttcgctccaccgcaaagactca 24507428  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcacc 176  Q
    | ||||||||||| ||||  ||  || | | |  |||||| | |||| |||||||||| ||||||||||||||||    
T  24507427 ttaccgccgtacc-gaaaccgtcaccgtcacactggagcattatccgtcaccgttgcctctcatccatcctcacc 24507354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 23269311 - 23269227
Alignment:
Q  7 cactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||| |||||||| |||||| |||||||||| || |||||||||||||| ||| || ||  ||||||||||||||||    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccg 23269227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 3459507 - 3459586
Alignment:
Q  4 caacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcg 83  Q
    ||||||||||||||| |||||  | |||||| |||||||||||||||  ||||||||||||||| |||||| ||||||||    
T  3459507 caacactttctacacactcttgctcagttccattactgacttgagcgccggagtgctaacgtgcctgcaggcacctttcg 3459586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 21416808 - 21416737
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcag 73  Q
    ||||||||||||||||| |||||| | |||| | |||||||||||||||| |||||||||||| ||||||||    
T  21416808 cacaacactttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacgagcatgcag 21416737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 17927752 - 17927813
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||| |||||||||| |||||||||||||||||||||||||| | ||||||||| |||||    
T  17927752 agttccattactgacttaagcgttggagtgctaacgtgcatgcatgcacctttcgtcccacc 17927813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 24576604 - 24576691
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    ||||||||||  ||||| ||| || | |||||| ||||||||||||||||  ||||| |||||||| |||||| ||||||||||||||    
T  24576604 cacaacacttcttacacactcatttttagttccattactgacttgagcgtcagagtgttaacgtgcctgcaggcacctttcgttccac 24576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 13754828 - 13754746
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgt 84  Q
    ||||||||||||||||| |||||| | |||| | ||||||||||||||| || |||| ||||||||  ||||| |||||||||    
T  13754828 cacaacactttctacacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagcaggcacctttcgt 13754746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 6928111 - 6928174
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgt 65  Q
    ||||||||||||||||| |||||| | |||||| ||||||||||||| |||| | |||||||||    
T  6928111 cacaacactttctacacactctttctcagttccattactgacttgagtgttgaaatgctaacgt 6928174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 26916919 - 26917005
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    ||||||||||||||||| |||| | | |||||| ||||||||||||||||| | | |||||||||| |  | | |||||||||||||    
T  26916919 cacaacactttctacacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgcctaaatgcacctttcgttcca 26917005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 18323013 - 18322924
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||| |||||||||  ||||| | |||||  ||||||||||||||||||||||| |||| ||  |||| | |||||| |||||||||    
T  18323013 cacaacattttctacacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgttccaccg 18322924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 14666889 - 14666949
Alignment:
Q  31 ttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| ||| |||||||| ||| ||||||||||||||| |||||| |||||| |||||||||    
T  14666889 ttccattattgacttgatcgtcggagtgctaacgtgcctgcaggcaccttttgttccaccg 14666949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 24070922 - 24070866
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtg 58  Q
    ||||||||||||||||| |||||| | |||||| |||||||||| || |||||||||    
T  24070922 cacaacactttctacacactctttcttagttccattactgacttaagtgttggagtg 24070866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 30477598 - 30477555
Alignment:
Q  136 ggagcactttccgccaccgttgccactcatccatcctcaccgga 179  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||    
T  30477598 ggagcactttccgccactgttgcctctcatccatcatcaccgga 30477555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 13765059 - 13764977
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgt 84  Q
    ||||||||||||||||| |||||| | |||| | ||||| |||||| | |||||||  |||||||| |||||  |||||||||    
T  13765059 cacaacactttctacacactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgcagacacctttcgt 13764977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 15058071 - 15058017
Alignment:
Q  36 ttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||| ||||| |||||| ||||||||||||| |||| | |||||||||||||||    
T  15058071 ttactaacttgtgcgttgtagtgctaacgtgcctgcatgcacctttcgttccacc 15058017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 26917033 - 26917075
Alignment:
Q  137 gagcactttccgccaccgttgccactcatccatcctcaccgga 179  Q
    |||| ||||| |||||||||||| |||||||||||||||||||    
T  26917033 gagccctttctgccaccgttgcctctcatccatcctcaccgga 26917075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 6928213 - 6928249
Alignment:
Q  140 cactttccgccaccgttgccactcatccatcctcacc 176  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  6928213 cactttccgccactgttgcctctcatccatcctcacc 6928249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 12127684 - 12127773
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| | | || | |||| | |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  12127684 cacaacactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgcaggtacctttcgtcccaccg 12127773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 45715061 - 45714977
Alignment:
Q  6 acactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||| ||||| |||||| | |||| | |||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  45715061 acactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccacc 45714977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 36267568 - 36267481
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    |||||| |||||||||| |||||| | |||| | ||||||||||||||||||||||| |||| |||||||||| ||||||| ||||||    
T  36267568 cacaaccctttctacacactctttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaggcacctttcattccac 36267481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 12169043 - 12168953
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttg-agcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | |||||| ||||||||||| |||||||||||| ||| |||| |||||  ||||||||||||||||    
T  12169043 cacaacactttctacacactctttcttagttccattactgacttgaagcgttggagtgttaatgtgcctgcagacacctttcgttccaccg 12168953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 27846540 - 27846622
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgt 84  Q
    ||||||||||||||||  || ||| | |||||| |||||||||||| ||||||||||||||||||| |||||| || ||||||    
T  27846540 cacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcaggcacttttcgt 27846622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 20120417 - 20120328
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| ||||||| |||| |||||| | |||| | ||||||||||||| || ||||||||||||||| |||||  ||||||||||||||||    
T  20120417 cacaccactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccaccg 20120328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 15825224 - 15825136
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||||||||| |||||| | |||||| |||| |||||||||||   ||||||||||||| |||||  || ||||||||||||    
T  15825224 cacaacactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgcagacacatttcgttccacc 15825136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 24157354 - 24157413
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    |||||| ||||||||||||||||  ||||||||||||||||| ||| |||||||||||||    
T  24157354 agttccattactgacttgagcgtcagagtgctaacgtgcatgtaggcacctttcgttcca 24157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 24499859 - 24499796
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgt 65  Q
    ||||||| ||||||||| |||||| | | |||| ||||||||||||||||||||||||||||||    
T  24499859 cacaacattttctacacactctttctcatttccattactgacttgagcgttggagtgctaacgt 24499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 3586433 - 3586344
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||| | || ||| | |||||| |||||||||||||||| ||||| |||||||||  ||| | ||||||| ||||||||    
T  3586433 cacaacactttctactcactttttctcagttccattactgacttgagcgtcggagtcctaacgtgccggcatgcacctttcattccaccg 3586344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 10923186 - 10923275
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| |||||||||||| |||||||| |||||| | ||||||||||| || |||||| |||||||| | ||   ||||||||||||||||    
T  10923186 cacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacatacacctttcgttccaccg 10923275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 18770384 - 18770296
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc--atgcaggaacctttcgttcca 88  Q
    ||||||||||||||||| |||||| | | || | ||||||||||||||||  ||||||||||||||  ||| ||| |||||||||||||    
T  18770384 cacaacactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgcctatgtaggcacctttcgttcca 18770296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 29711059 - 29710999
Alignment:
Q  31 ttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| ||| |||||||||||||||||||||||||||||||||   |||||| |||||||||    
T  29711059 ttccattagtgacttgagcgttggagtgctaacgtgcatgcatacaccttttgttccaccg 29710999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 45258173 - 45258262
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||| ||||  ||||| | |||| | ||||| |||||||| |||||||| |||||||| |||||  | ||||||||||||||    
T  45258173 cacaacactttcgacacattctttcttagtttcattacttacttgagctttggagtgttaacgtgcctgcagacatctttcgttccaccg 45258262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 148777 - 148721
Alignment:
Q  34 ctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||| ||||||| |||||||||||||||||| | || ||||||| |||||||||    
T  148777 ctttactaacttgagtgttggagtgctaacgtgcctacaagaaccttacgttccacc 148721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 24318956 - 24318894
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| ||||| |||||| ||| ||| ||||||||||| ||||||  |||||||||||||||    
T  24318956 agttccattactaacttgatcgtcggaatgctaacgtgcctgcaggcgcctttcgttccaccg 24318894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 24755538 - 24755452
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    ||||||| ||||||||| || |||  ||||||| | ||||||||||| |||||||| ||||||||| || | | | |||||||||||    
T  24755538 cacaacaatttctacacactttttcagagttccatcactgacttgagggttggagtactaacgtgcttgtatgcaactttcgttcca 24755452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 28426178 - 28426232
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||| | | |||||||||| |||| |||||| ||||||||||||||||    
T  28426178 tactgacttgatcatcggagtgctaatgtgcctgcaggcacctttcgttccaccg 28426232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 45714952 - 45714914
Alignment:
Q  136 ggagcactttccgccaccgttgccactcatccatcctca 174  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  45714952 ggagcactttccgccattgttgccactcatccatcctca 45714914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 19050456 - 19050545
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  ||||| |||||| | |||||  ||||||||||||||||  ||||||||||| |  ||||   ||||||||||||||||    
T  19050456 cacaacacttcttacactctctttcttagttctattactgacttgagcgtcagagtgctaacgggtctgcaaatacctttcgttccaccg 19050545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 12634880 - 12634828
Alignment:
Q  38 actgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||||| || ||||||||| |||||||| |||| | |||||||||||||||    
T  12634880 actgacttaagagttggagtgttaacgtgcctgcatgcacctttcgttccacc 12634828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 19919087 - 19919175
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||||||||  |||||| | | |||| ||| ||||||  ||||| |||| |||| || | |||||| |||||||||||||||    
T  19919087 cacaacactttctacatactctttctcatttccattattgactttggcgttagagttctaatgttcctgcaggcacctttcgttccacc 19919175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 26713591 - 26713627
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcag 73  Q
    |||||||||||| |||||||||||||||||| |||||    
T  26713591 tactgacttgagtgttggagtgctaacgtgcctgcag 26713627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 13992 - 13903
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | |||| | |||||||||||||| ||||||| ||||||||||| || | ||||||||| ||||||    
T  13992 cacaacactttctacacactctttctcagtttcattactgacttgagctttggagtactaacgtgcattcatgcacctttcgtcccaccg 13903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 95831 - 95920
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||| | |||||| | |||||| ||||| |||||||||||| |||| |||||||| ||||||||||||| || ||||||    
T  95831 cacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctgcaggaaccttttgtcccaccg 95920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 22903163 - 22903074
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | |||||| |||||||||||||||||| ||||||||| ||| | |   |||||||||||||||||    
T  22903163 cacaacactttctacacactctttctcagttccattactgacttgagcgttgaagtgctaacatgcctacgaaaacctttcgttccaccg 22903074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 26348127 - 26348189
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  26348127 agttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 26348189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 25537475 - 25537386
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||  |||||  ||||| | |||||| ||||   ||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  25537475 cacaacacttcatacacaatctttctcagttccattacaatcttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccg 25537386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 18799823 - 18799761
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| |||||||||||| ||| ||||||||||||||  |||||||| ||||||||||||||    
T  18799823 agttccattactgacttgatcgtcggagtgctaacgtgactgcaggaatctttcgttccaccg 18799761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 26163668 - 26163619
Alignment:
Q  39 ctgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  26163668 ctgacttgagcgttggagtgctaatgtgcatgcatgcacctttcgttcca 26163619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 26994627 - 26994804
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    |||||||| ||||| || |||||| | | |||| |||||||||||||||| ||||||||||||||  || ||  |||||| || |||| | ||||| |      
T  26994627 cacaacaccttctaaacactctttctcaattccattactgacttgagcgtcggagtgctaacgtgtctgaagacaccttttgtcccactgcaaggactcg 26994726  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcaccgga 179  Q
    ||||| ||||||| ||||   |  || | | || |||||||||||| |||| ||| || |||||||||||||||||||    
T  26994727 tcaccaccgtaccagaaaccatcaccgtcacatcggagcactttccaccactgttacctctcatccatcctcaccgga 26994804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 8938978 - 8938893
Alignment:
Q  6 acactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||| ||||| |||||| | ||||||  |||||||| |||| |||||||| |||||||| |||| | ||||||||||| ||||    
T  8938978 acactttttacacactctttctcagttccaatactgactagagcattggagtgttaacgtgcctgcatgcacctttcgttctaccg 8938893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 27083259 - 27083347
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| ||||||   |||| ||| ||||||||||| |||||||||||||||||  |||||  || |||||||| ||||    
T  27083259 cacaacactttctacacactctttcacagtttctt-actgacttgagtgttggagtgctaacgtgtctgcagacacatttcgttctaccg 27083347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 32418643 - 32418684
Alignment:
Q  138 agcactttccgccaccgttgccactcatccatcctcaccgga 179  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  32418643 agcattttccgccaccgttgccattcatccatcctcaccgga 32418684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 25333804 - 25333716
Alignment:
Q  3 acaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||||||| |||| | | |||| | |||||||||||||||| ||||| ||||  ||| |||| | |||||||| |||||||    
T  25333804 acaacactttctacacactctctcttagttacattactgacttgagcgtcggagtactaatatgcctgcaagtacctttcgctccaccg 25333716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 19993186 - 19993265
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaaccttt 81  Q
    |||||||||||| |||| |||||| | |||||| |||||||||||||  ||||| |||||| |||  |||| ||||||||    
T  19993186 cacaacactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtgtctgcaagaaccttt 19993265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 25333659 - 25333616
Alignment:
Q  148 gccaccgttgccactcatccatcctcaccggatagattaattat 191  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||    
T  25333659 gccatcgttgccactcatccatcctcaccggacagataaattat 25333616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 22903048 - 22903002
Alignment:
Q  138 agcactttccgccaccgttgccactcatccatcctcaccggatagat 184  Q
    |||||||||||||| ||||||| |||||||||||||| |||| ||||    
T  22903048 agcactttccgccaacgttgcctctcatccatcctcatcggacagat 22903002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 24647358 - 24647272
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    ||||||||||  ||||| |||||| | |||||| ||||||| ||||||||||||||| ||| ||| ||| | | ||| |||||||||    
T  24647358 cacaacacttcttacacactctttttcagttccattactgaattgagcgttggagtgttaaagtgtatgtatgcacccttcgttcca 24647272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 8938866 - 8938829
Alignment:
Q  137 gagcactttccgccaccgttgccactcatccatcctca 174  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  8938866 gagcactttccgccaccattgcctctcatccatcctca 8938829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 20025353 - 20025264
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | |||| | || |||||   |||||||||||| |||||||  |||||  ||||||||| ||||||    
T  20025353 cacaacactttctacacactctttctcagtttcattcctgacagtagcgttggagtgttaacgtgtgtgcagacacctttcgtcccaccg 20025264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 4477233 - 4477153
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcaccgccgtaccgga 117  Q
    |||||||||||||||||||||  |||||||| ||| || ||| ||||| |||||| || || | ||| || ||||||||||    
T  4477233 tactgacttgagcgttggagtattaacgtgcctgcgggcacccttcgtcccaccgcaaagactcatcgccaccgtaccgga 4477153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 19846121 - 19846053
Alignment:
Q  20 ctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttcca 88  Q
    |||||| | ||||||  |||||||||||| ||| ||||||||| |||  |||||| |||||||||||||    
T  19846121 ctctttcttagttccaatactgacttgagtgttagagtgctaatgtgtctgcaggcacctttcgttcca 19846053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 19993299 - 19993335
Alignment:
Q  136 ggagcactttccgccaccgttgccactcatccatcct 172  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  19993299 ggagcactttccgccaccgttgcctctcgtccatcct 19993335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 17143770 - 17143835
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    ||||||||||||||||| |||||| | |||||| |||||||||||||||| |||||||||||||||    
T  17143770 cacaacactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgc 17143835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 9801105 - 9801191
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    ||||||||||||||||| |||||| |  ||||  ||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||    
T  9801105 cacaacactttctacacactctttctctgttctattactgacttgagtgttg-agtgctaacgtgcttgcaggcacctttcgttccac 9801191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 21649456 - 21649394
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||| |||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||    
T  21649456 agttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccg 21649394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 21342308 - 21342397
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||||| || |||||||| |||||| |||||||||||||||||| | || |||||||| ||||   ||||||||| ||||||    
T  21342308 cacaacactttctatacactctttatcagttccattactgacttgagcgttgtactgttaacgtgcctgcatatacctttcgtcccaccg 21342397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 8122969 - 8123117
Alignment:
Q  36 ttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcaccgccgtaccggaaattgttgccctaatata 135  Q
    |||||||||||||||||||||||||||||||| ||||   ||||||| ||  ||||  | || | |||  | |||||||||||||  ||||| | | |      
T  8122969 ttactgacttgagcgttggagtgctaacgtgcctgcatacacctttcattttaccgtgaagactcatcgtcaccgtaccggaaatcattgccatcacact 8123068  T
Q  136 ggagcactttccgccaccgttgccactcatccatcctcaccggatagat 184  Q
    ||||||||||||  |||||||||| || |||||||||||||||| ||||    
T  8123069 ggagcactttccatcaccgttgcctcttatccatcctcaccggacagat 8123117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 1770895 - 1770806
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||  | |||||| ||||| |||||||||| ||||| ||||| ||| |||||  ||||||| ||||||||    
T  1770895 cacaacactttctacacactcttcctcagttccattactaacttgagcgtcggagtactaacatgcttgcagacacctttccttccaccg 1770806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 12516255 - 12516167
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    ||||||||||  |||||  ||||| | |||||| ||||| |||||||||| ||||||||||||||  |||||| |||||||||| ||||    
T  12516255 cacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcacctttcgtttcacc 12516167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 9007832 - 9007879
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgt 84  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||||    
T  9007832 tactgacttgagcgttggagtgttaacgtgcctgcaggcacctttcgt 9007879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 28723795 - 28723860
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    ||||||| ||||||||| |||||| | |||||| ||| |||||||||||||||| ||| |||||||    
T  28723795 cacaacattttctacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgc 28723860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 30606998 - 30606937
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaac 63  Q
    ||||||||||||||| | |||||| | | |||| |||||||||||||||||||| |||||||    
T  30606998 cacaacactttctactcactctttctcaattccattactgacttgagcgttggaatgctaac 30606937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 431337 - 431426
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| ||||||| || | |||||| | |||||| ||| |||||||||||| | ||||||||||||  || ||| ||||||| ||||||||    
T  431337 cacagcactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggcacctttctttccaccg 431426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 1475783 - 1475730
Alignment:
Q  38 actgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||||||||||||||| | ||| |||||  ||||||||| ||||||    
T  1475783 actgacttgagcgttggagtgctagcatgcctgcagacacctttcgtcccaccg 1475730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 16704472 - 16704407
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgc 67  Q
    ||||||||||||||||| |||||| | |  ||| |||||||||| ||||||||| ||| |||||||    
T  16704472 cacaacactttctacactctctttctcaactccattactgacttcagcgttggaatgccaacgtgc 16704407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 17485645 - 17485734
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||| | ||||||| ||| || | | |||| ||||||||||||||||||| ||||||| ||||   |||  ||||||||||||||||    
T  17485645 cacaacattctctacacactccttctcaattccattactgacttgagcgttggggtgctaatgtgcccacagacacctttcgttccaccg 17485734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 28715509 - 28715573
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgc 71  Q
    ||||||||||| ||||| |||||| | |||||| |||||||||     ||||||||||||||||||||||    
T  28715509 cacaacactttatacacactctttctcagttccattactgact-----gttggagtgctaacgtgcatgc 28715573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 35314178 - 35314207
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtg 66  Q
    ||||||||||||||||||||||||||||||    
T  35314178 tactgacttgagcgttggagtgctaacgtg 35314207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 2311855 - 2311943
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||||||||||||||  ||||| | |  ||| || |||| ||||||||||||||||||||||   |||||  ||||||| |||||||    
T  2311855 cacaacactttctacacattctttctcaaatcccttgctgatttgagcgttggagtgctaacgtatctgcagacacctttcattccacc 2311943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 28715621 - 28715665
Alignment:
Q  140 cactttccgccaccgttgccactcatccatcctcaccggatagat 184  Q
    |||||||||||||  ||||| |||||||||||||| |||||||||    
T  28715621 cactttccgccacttttgcctctcatccatcctcatcggatagat 28715665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 10936 - 11052
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    ||||||||||  ||||| |||| | | |||||| ||| |||||||||||||||||||||||||||| ||||   |||||| ||||||||| |  |||| |    
T  10936 cacaacacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaacgtgcctgcatacaccttttgttccaccgcagagattca 11035  T
Q  102 tcaccgccgtaccggaa 118  Q
    || ||||||||||||||    
T  11036 tcgccgccgtaccggaa 11052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 22929 - 22869
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    |||||| ||||||||||||||||  ||||||||||||||  ||||| ||||||||| ||||    
T  22929 agttccattactgacttgagcgtcagagtgctaacgtgcccgcaggcacctttcgtcccac 22869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 29331 - 29472
Alignment:
Q  36 ttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggatttatcaccgccgtaccggaaattgttgccctaatata 135  Q
    |||||||||||||||||||||||||||| ||  | || | ||||||||||||||||  | || | |||| || |||||| |||| |||  || | |||      
T  29331 ttactgacttgagcgttggagtgctaacatgactccatgcacctttcgttccaccgcgaagactcatcatcgtcgtaccagaaactgtcaccgtcatacc 29430  T
Q  136 ggagcactttccgccaccgttgccactcatccatcctcaccg 177  Q
    |||||||||| ||| ||||||||||| ||||||| |||||||    
T  29431 ggagcactttgcgcaaccgttgccacgcatccattctcaccg 29472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 69281 - 69333
Alignment:
Q  38 actgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  69281 actgacttgagcgttggagtgctaacgtgcctgcaggcaccttttgttccacc 69333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 8598 - 8788
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccgaaaggattta 101  Q
    ||||||||||||||||| || ||| | |||| | |||||||||||||||| | ||||||||||||| ||||   ||||||  |||||||| || || | |    
T  8598 cacaacactttctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtgc-tgcaaacaccttttattccaccgcaaagactca 8696  T
Q  102 tcaccgccgtaccggaaattgttgccctaatataggagcactttccgccaccgttgccactcatccatcctcaccggatagattaattatca 193  Q
     | ||||||||| ||||| |||| |  | | |  |||||| | ||||||||||||| |||||||| ||||||| | ||||||| | ||||||    
T  8697 acgccgccgtactggaaactgttactgtcacagcggagcattatccgccaccgttgtcactcatctatcctcatcagatagatcatttatca 8788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 15451 - 15515
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtg 66  Q
    |||||||||||||| |  |||||| | |||||| ||||||||| |||||| ||||||||||||||    
T  15451 cacaacactttctagatactctttctcagttccattactgactggagcgtcggagtgctaacgtg 15515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 4483 - 4533
Alignment:
Q  40 tgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccacc 90  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  4483 tgacttgagcgttggagtgctaacgtgcttgcagacacctttcgttccacc 4533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 7955 - 7866
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    ||||||||||||||||| |||||| | | || | ||||||| ||||||||| |||||||||||||| | || | ||||||| ||||||||    
T  7955 cacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttccaccg 7866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 40863 - 40782
Alignment:
Q  5 aacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttc 86  Q
    ||||||| |||||| |||| | | |||||| | |||||||||||||||||||||||||||||| |||| |  ||||||||||    
T  40863 aacacttcctacactctctctttcagttccatcactgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttc 40782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 6368 - 6281
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    ||||||||||||||||| || ||| | |||||| |||||||||||||| | | ||||||||||||| ||||   |||||| |||||||    
T  6368 cacaacactttctacacactatttctcagttccattactgacttgagcttcgaagtgctaacgtgcctgcaaacaccttttgttccac 6281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 35323 - 35240
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgtt 85  Q
    |||||||||||| |||| |||||| | |||||| ||||||||||||| ||  |||||||||||||| |||| | || |||||||    
T  35323 cacaacactttccacacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcacatttcgtt 35240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 264 - 326
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacg 64  Q
    ||||||||||  ||||| |||||| | |||||| |||||||||||||||| ||||||||||||    
T  264 cacaacacttcttacacactctttctcagttccattactgacttgagcgtcggagtgctaacg 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 20521 - 20607
Alignment:
Q  5 aacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||| ||||||||| |||||| | |||||||||| ||||||||||||  |||||||||| ||  || | | ||||||||||||||||    
T  20521 aacattttctacacactctttctcagttcctttagtgacttgagcgtcagagtgctaacatgtttgtaagcacctttcgttccaccg 20607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 68823 - 68885
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtg 66  Q
    |||||||||||||| ||  ||||| | |||||| ||||| |||||||||||||||||||||||||    
T  68823 cacaacactttctatac--tctttctcagttccattactaacttgagcgttggagtgctaacgtg 68885  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 215342 - 215258
Alignment:
Q  2 cacaacactttctacaccctctttatgagttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttc 86  Q
    ||||||||||  ||||| |||| | | |||| | |||||||||||||||||||| ||||||||||| |||||  | |||||||||    
T  215342 cacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc 215258  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 18526 - 18580
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccaccg 91  Q
    |||||||||||| ||||||||||||| |||  ||||||||| ||||||| |||||    
T  18526 tactgacttgagtgttggagtgctaaagtgtctgcaggaacatttcgtttcaccg 18580  T

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Target: scaffold0518 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 9013 - 8954
Alignment:
Q  29 agttcctttactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    |||||| ||||  |||||||||||||||||||||||||  |||||| ||| ||||||||||    
T  9013 agttccattacatacttgagcgttggagtgctaacgtgtctgcaggcacc-ttcgttccac 8954  T

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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 21674 - 21726
Alignment:
Q  37 tactgacttgagcgttggagtgctaacgtgcatgcaggaacctttcgttccac 89  Q
    |||||||||||| ||||||||||||||||||  ||||| ||  ||||||||||    
T  21674 tactgacttgagtgttggagtgctaacgtgcccgcaggcacacttcgttccac 21726  T

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