View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_38 (Length: 261)
Name: NF11374_low_38
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_38 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 45633283 - 45633034
Alignment:
| Q |
15 |
gatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgaag |
114 |
Q |
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| T |
45633283 |
gatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgagg |
45633184 |
T |
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| Q |
115 |
ctttagacaggtaattaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaaataagcc---gaatatgcatgcatatacactt |
211 |
Q |
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| T |
45633183 |
ctttagacaggtaattaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaagtaagccgttgaatatgcatgtatatacactt |
45633084 |
T |
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| Q |
212 |
ttttgtctaaaacattaatttatgttagagtaggttgttgaaggtcaacc |
261 |
Q |
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| T |
45633083 |
ttttatctaaaacattaatttatgttagagtaggttgttgaaggtcaacc |
45633034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 2657970 - 2658219
Alignment:
| Q |
15 |
gatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgaag |
114 |
Q |
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| T |
2657970 |
gatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgagg |
2658069 |
T |
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| Q |
115 |
ctttagacaggtaattaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaaataagcc---gaatatgcatgcatatacactt |
211 |
Q |
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| T |
2658070 |
ctttagacaggtaattaagcattttatggccaatatataacgaataatttatagaaatttgatgtgaagtaagccgttgaatatgcatgtatatacactt |
2658169 |
T |
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| Q |
212 |
ttttgtctaaaacattaatttatgttagagtaggttgttgaaggtcaacc |
261 |
Q |
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| T |
2658170 |
ttttatctaaaacattaatttatgttagagtaggttgttgaaggtcaacc |
2658219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 5879358 - 5879221
Alignment:
| Q |
15 |
gatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaagatacttcgaag |
114 |
Q |
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| T |
5879358 |
gatgaagctgagaaatatctaactggattcacaaaagttgaagacaacggtcactccaccaaaatattctttgaacttagaaagcaaaaatatcttgagg |
5879259 |
T |
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| Q |
115 |
ctttagacaggtaattaagcattttatggccaatatat |
152 |
Q |
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| T |
5879258 |
cattggacaggtagttaagaattttatgctcaatatat |
5879221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 5875469 - 5875426
Alignment:
| Q |
15 |
gatgaagttgagaaatatctttctggatttacaaaagttgaaga |
58 |
Q |
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| T |
5875469 |
gatgaagctgagaaatatctatctggattcacaaaagttgaaga |
5875426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 20444645 - 20444553
Alignment:
| Q |
10 |
agtgagatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaa |
102 |
Q |
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| T |
20444645 |
agtgggatgaaactgagaaatatctatcaggattcacaaaagttgaagacaacgatcactcaatcaaaatatattttgagcttagaaaacaaa |
20444553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 20409536 - 20409444
Alignment:
| Q |
10 |
agtgagatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaa |
102 |
Q |
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| T |
20409536 |
agtgggatgaagctgagaagtatctatcaggattcacaaaagttgaagacagcgatcactcaatcaaaatatattttgagcttagaaaacaaa |
20409444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 20444419 - 20444497
Alignment:
| Q |
10 |
agtgagatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttga |
88 |
Q |
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| T |
20444419 |
agtgggatgaagctgagaactatctatcaggattcacaaaagttgaagacaacgatcactaaatcaaaatatattttga |
20444497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 20424944 - 20424852
Alignment:
| Q |
10 |
agtgagatgaagttgagaaatatctttctggatttacaaaagttgaagacaataatcattcaattaaaatatactttgaattgagaaaacaaa |
102 |
Q |
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| T |
20424944 |
agtgggatgaagctgataaatatctatcaggattcacaaaagttgaagacaacgatcacttagtcaaaatatattttgagcttagaaaacaaa |
20424852 |
T |
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