View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_39 (Length: 256)
Name: NF11374_low_39
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 3598572 - 3598795
Alignment:
| Q |
4 |
tgtctttctcaacataaccagtaacatctaaaaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataaactattcaaaag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598572 |
tgtctttctcaacataaccagtaacatctaaaaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataaactattcaaaag |
3598671 |
T |
|
| Q |
104 |
agaagagtaactaaccaagtatccaatcctccttagagcatcctaaaatctctagaaaaggattaataatttaggtcaataattattaaggccttccgca |
203 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
3598672 |
agaagag----taaccaagtatccaatcctccttagagcatcctaaaatctctagaaaaggattaataatttaggacaataattattaaggccatctgca |
3598767 |
T |
|
| Q |
204 |
atatgtgtttctaaagctgcagcaagcc |
231 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
3598768 |
atttgtgtttctaaagctgcagcaagcc |
3598795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 4356449 - 4356289
Alignment:
| Q |
4 |
tgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataaactattcaaa |
101 |
Q |
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||||||||||||||| |||| |||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
4356449 |
tgtctttctcaacatgaccaataacatcttaaaatatgatttcattttccaagtatatatgagaaatgaactaacaactcctgaaaataaacaattcaaa |
4356350 |
T |
|
| Q |
102 |
agagaagagtaactaaccaagtatccaatcctccttagagcatcctaaaatctctagaaaa |
162 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |
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|
| T |
4356349 |
agagaagagtaactaaccaagtatccgatccttcttagagcatgctaaaatctctagaaaa |
4356289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 45221405 - 45221567
Alignment:
| Q |
4 |
tgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataaactattcaaa |
101 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
45221405 |
tgtctttctcaacatgaccaataacatctaaaaatatgatttcattttccaagtatatatgagaaatgaactaaaaactcatgaaaataaacaattcaaa |
45221504 |
T |
|
| Q |
102 |
agagaagagtaactaaccaagtatccaatcctccttagagcatcctaaaatctctagaaaagg |
164 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||| |
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|
| T |
45221505 |
agagaagagtaactaaccaagtatctgatccttcttagagcatgctaaaatctctggaaaagg |
45221567 |
T |
|
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