View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_4 (Length: 789)
Name: NF11374_low_4
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 48415959 - 48416244
Alignment:
| Q |
18 |
gagtttctgttcatgataaaggatgttattggccatttcattgtaaggctgcatcagcacacttaagattcaatgctctggtgctgaaatagtctaaact |
117 |
Q |
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| T |
48415959 |
gagtttctgttcatgataaaggatgttattggccatttcattgtaaggctgcatcagcacacttaagattcaatgctctggtgctgaaatagtctaaact |
48416058 |
T |
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| Q |
118 |
caaaactagatgatacaagaaagaatgggaaatactaaatagtacatttgcgtttttggaagactgaaagaaccaagtggactaaaagggttgggttgga |
217 |
Q |
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| T |
48416059 |
caaaactagatgatacaagaaagaatgggaaatactaaatagtacatttgcgtttttggaagactgaaagaaccaagtggactaaaagggttgggttgga |
48416158 |
T |
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| Q |
218 |
cttcatgttctacttgtacatttgccaatagactagtagtannnnnnnataacttgccgtacttgtttaagtacaagaatttacatt |
304 |
Q |
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| T |
48416159 |
cttcatgttctacttgtacatttgccaatagactagtagta-ttttttataacttgccgtacttgtttaagtacaagaatttacatt |
48416244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 508 - 779
Target Start/End: Original strand, 48416476 - 48416747
Alignment:
| Q |
508 |
caatttttattcaatctgtcaaaataaacaaaggtgttgaatcccataaagtaaagtcataattattaacatcatagatagatgagatgttgtaacacgt |
607 |
Q |
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| T |
48416476 |
caatttttaattaatctgtcaaaataaacgaaggtgttgaatcccataaagtaaagccataattattaacaccatagatagatgggatgttgtaacacgt |
48416575 |
T |
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| Q |
608 |
aacaaatcaagaccatccaatctaaaacatgtgattgagaccgtttagaaagattttataactatattaatttgaaccgttcgaattttaattaatgatc |
707 |
Q |
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| T |
48416576 |
aacaaatcaagaccatccaatctaaaacatgtgattgagatcgtttagaaagattttataactatattaatttgaaccggtcgaattttaattaatgatc |
48416675 |
T |
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| Q |
708 |
gagatctaataatatgaaaattgcctgctttattacaccaccgaatcacgatcgagttaaatgttgcctttg |
779 |
Q |
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| T |
48416676 |
gagatctaataatatgaaaattgcgtgctttattacaccaccgaatcacgatcgagttaaatgttgcctttg |
48416747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 341 - 486
Target Start/End: Original strand, 48416294 - 48416444
Alignment:
| Q |
341 |
agacttcacctaagtttaccttaatacaaaaatttgatttattttcttagttgg-----tgcaaaaatattacaaaaaattaatcatcttaactatgttg |
435 |
Q |
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| T |
48416294 |
agacttcacctaagtttaccttaatacaaaaatttgatttattttcttagttggatgcatgcaaaaatattacaaaaaattaatcatcttaactatgttg |
48416393 |
T |
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| Q |
436 |
acacgacaatctatttcctatcatttgcaagacactcgaagaatattattt |
486 |
Q |
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| T |
48416394 |
atacgacaatctatttcctatcatttgcaagacactcgaagaatattattt |
48416444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 712
Target Start/End: Original strand, 35003430 - 35003536
Alignment:
| Q |
606 |
gtaacaaatcaagaccatccaatctaaaacatgtgattgagaccgtttagaaagattttataactatattaatttgaaccgttcgaattttaattaatga |
705 |
Q |
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| T |
35003430 |
gtaacaaatcaggatcatccgatctaaaacatgtggttgagattggtttgaatgattttataattgcattgatttgaaccattcaatctttaattaatgg |
35003529 |
T |
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| Q |
706 |
tcgagat |
712 |
Q |
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| T |
35003530 |
tcgagat |
35003536 |
T |
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