View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_43 (Length: 242)
Name: NF11374_low_43
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_43 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 40849419 - 40849660
Alignment:
| Q |
1 |
acagagcaccgatacaacatcaatagtgagacatgtaaacatcagtaacaatttgagaaaataaaaatggtcgaatgcaaatgcttgtctcgatgtcgaa |
100 |
Q |
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| T |
40849419 |
acagagcaccgatacaatatcaatagtgagacatgtaaacatcagtaacaatttgagaaaataaaaatgatcgaatgcaaatgcttgtctcgatgtcgaa |
40849518 |
T |
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| Q |
101 |
tcatgcattgaaaaccaaacacacatttagtttgaagtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaacctt |
200 |
Q |
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| T |
40849519 |
tcatgcattgaaaaccaaacacacatttagtttgaagtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaacctt |
40849618 |
T |
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| Q |
201 |
gaggaaagcaagaggtccgtggcttttcagatctcctgcttc |
242 |
Q |
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| T |
40849619 |
gaggaaagcaagaggtccgtggcttttcagatctcctgcttc |
40849660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 40843592 - 40843720
Alignment:
| Q |
114 |
accaaacacacatttagtttgaagtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaaga |
213 |
Q |
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| T |
40843592 |
accagacacacttttaatttgaagtgtctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaa |
40843691 |
T |
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| Q |
214 |
ggtccgtggcttttcagatctcctgcttc |
242 |
Q |
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| T |
40843692 |
ggtccatggcttttcagaattcctgcttc |
40843720 |
T |
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