View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_45 (Length: 237)
Name: NF11374_low_45
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 6408294 - 6408107
Alignment:
| Q |
5 |
aatataattcatgtagcaaataagttctagtctccaaagctcaacatacctcatctaacattcaaacagaatataaagcaaaataggaaataagttctag |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6408294 |
aatataattcttgtagcaaataagttctagtctccaaagctcaacataacatatctaacattcaaacagaatataaagcaaaataggaaataagttctag |
6408195 |
T |
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| Q |
105 |
cctccaagggttaaaataaaataaacgaaagaaaggaaaaacaggagcattcgccaatgtccatgggcacaataatcatctgcagtat |
192 |
Q |
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| T |
6408194 |
cctccaagggttaaaataaaataaacgaaagaaaggaaaaacaggagcattcgccaatgtccatgggcacaataatcatctgcagtat |
6408107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 6411477 - 6411410
Alignment:
| Q |
33 |
agtctccaaagctcaacatacctcatctaacattcaaacagaatataaagcaaaataggaaataagtt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
6411477 |
agtctccaaagctcaacataagacatctaacattcaaacaggacataaagcaaaataggaaataagtt |
6411410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 22221680 - 22221786
Alignment:
| Q |
19 |
agcaaataagttctagtctccaaagctcaacatacctcatctaacattcaaacagaatataaagcaaaataggaaataagttctagcctccaagggttaa |
118 |
Q |
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||||||||||||| ||||||||| |||||| ||| | ||||||| |||||||| |||||| ||||||||||||||| | || ||||||||||| | || |
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| T |
22221680 |
agcaaataagttccagtctccaaggctcaaaataacacatctaatattcaaactgaatatgaagcaaaataggaaacagatttaagcctccaaggctcaa |
22221779 |
T |
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| Q |
119 |
aataaaa |
125 |
Q |
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||||||| |
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| T |
22221780 |
aataaaa |
22221786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 4966699 - 4966862
Alignment:
| Q |
64 |
attcaaacagaatataaagcaaaataggaaataagttctagcctccaagggttaaaataaaataaacgaa----agaaaggaaaaacaggagcattcgcc |
159 |
Q |
| |
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||||||||| || |||||||| ||| |||||||||||||||||||||||| | ||| ||||||||||||| |||||||||| | || ||||||| | |
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| T |
4966699 |
attcaaacataacataaagcagaattggaaataagttctagcctccaaggttcaaagtaaaataaacgaatgaaagaaaggaaataaagaagcattcctc |
4966798 |
T |
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| Q |
160 |
aatgtccatgggcacaataatcatctgcagtattgccaaaagatgcatcaaagggatccttcac |
223 |
Q |
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|||||| || |||||||| ||||||||||||||||||||||| |||| |||| || |||||||| |
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| T |
4966799 |
aatgtctataggcacaatgatcatctgcagtattgccaaaagttgcaacaaatggctccttcac |
4966862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 9824252 - 9824374
Alignment:
| Q |
3 |
ataatataattcatgtagcaaataagttctagtctccaaagctcaacatacctcatctaacattcaaacagaatataaagcaaaataggaaataagttct |
102 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||||| |||||| || | |||||| ||||||||| | ||||| ||||| |||||||||||| | |
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| T |
9824252 |
ataatataattcaagtagcaaataagttgtagcctccatggctcaaagtaacatatctaatattcaaacatatcataaatcaaaaaaggaaataagttat |
9824351 |
T |
|
| Q |
103 |
agcctccaagggttaaaataaaa |
125 |
Q |
| |
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||||||||||| | ||||||||| |
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| T |
9824352 |
agcctccaaggctcaaaataaaa |
9824374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 4966586 - 4966672
Alignment:
| Q |
26 |
aagttctagtctccaaagctcaacatacctcatctaacattcaaacagaatataaagcaaaataggaaataagttctagcctccaag |
112 |
Q |
| |
|
||||||||| |||||| |||||| || | ||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| |
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| T |
4966586 |
aagttctaggctccaaggctcaaaatgacacatctaatattcaaacatagcataaagcaaaataggaaacaagttctagcctccaag |
4966672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 9818534 - 9818659
Alignment:
| Q |
3 |
ataatataattcatgtagcaaataagttctagtctccaaagctcaacatacctc---atctaacattcaaacagaatataaagcaaaataggaaataagt |
99 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||| | |||||| ||| | ||| || |||| |||| || ||||||||||||||||||||||| |
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| T |
9818534 |
ataatataattcaagtagcaaataagttgtagcctccgaggctcaaaataacaacatatcgaatattccaacataacataaagcaaaataggaaataagt |
9818633 |
T |
|
| Q |
100 |
tctagcctccaagggttaaaataaaa |
125 |
Q |
| |
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| ||||||||||| | ||||||||| |
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| T |
9818634 |
tatagcctccaagactcaaaataaaa |
9818659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 7685986 - 7686064
Alignment:
| Q |
142 |
aaaacaggagcattcgccaatgtccatgggcacaataatcatctgcagtattgccaaaagatgcatcaaagggatccttcac |
223 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| ||| ||||||||| ||||||| |||| ||||||| |||||||| |
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| T |
7685986 |
aaaacagaagcattccccgatgtccatgggcacaatgatc---tgcagtatttccaaaagttgcaccaaagggctccttcac |
7686064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 40404590 - 40404545
Alignment:
| Q |
178 |
aatcatctgcagtattgccaaaagatgcatcaaagggatccttcac |
223 |
Q |
| |
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||||||||||||||||||| |||| |||||| ||||| |||||||| |
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| T |
40404590 |
aatcatctgcagtattgcctaaagttgcatctaagggttccttcac |
40404545 |
T |
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