View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_46 (Length: 229)
Name: NF11374_low_46
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 43223294 - 43223104
Alignment:
| Q |
6 |
attttaggcaagtgatcactatcactataccgtttataaatgaagaaatgcaaacagagatcacaaattcaagatgaaccaaatgcatgaatgaagaaga |
105 |
Q |
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| T |
43223294 |
attttaggcaagtgatcactatcactataccgtttataaatgaagaaatgtaaacagagatcacaaactcaagatgatccaaatgcatgaatgaagaaga |
43223195 |
T |
|
| Q |
106 |
ggggaaacaaatcatagaccaatataagaaacgatgaaggatgaatatagtatcaaatactctctatcccacaacgtctaagcgacttgcg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||||||| |
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| T |
43223194 |
ggggaaacaaatcatagaccaatataagaaacgatgaaggatgaatatactatcaaatactctctgtcccacaacgtttaagtgacttgcg |
43223104 |
T |
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