View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_47 (Length: 227)
Name: NF11374_low_47
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15447347 - 15447528
Alignment:
| Q |
1 |
attcgatttaaatgcctaccttgcaaaatttgaatcgatttattgtaaccttcggatgtctatttcttgtttattgaatcatatcaaaactttttgaata |
100 |
Q |
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| T |
15447347 |
attcgattcaaatgtctgccttgcaaaatttgaatcgactcattgtgaccttcggatgtctatttcttgtttattgaatcatatcaaaactttttgaata |
15447446 |
T |
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| Q |
101 |
gtatcacttcatgaaatactgaatccgttcaattttttcttgattcaattcattcttcatccagaattgcccagaatcgatt |
182 |
Q |
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| T |
15447447 |
gtatcacttcaggaaacactgaatcgattcaattttttcttgattcaattcattcttcatctagaattgcctaaaatcgatt |
15447528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 22412202 - 22412287
Alignment:
| Q |
21 |
ttgcaaaatttgaatcgatttattgtaaccttcggatgtctatttcttgtttattgaatcatatcaaaactttttgaatagtatca |
106 |
Q |
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| T |
22412202 |
ttgcaaaatttgaatcgttccattgtgaccttcggctgtctattttttgttcattgaatcgtatcaaaagtttttgaatagtatca |
22412287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 3822406 - 3822552
Alignment:
| Q |
27 |
aatttgaatcgatttattgtaaccttcggatgtctatttcttgtttattgaatcatatcaaaactttttgaatag--tatcacttcatgaaatactgaat |
124 |
Q |
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|||||||||||||| ||| | |||||||| ||| | ||||||||||| | ||| |||||||| ||||||||| | ||| ||||| ||| ||||||| |
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| T |
3822406 |
aatttgaatcgattcattatgaccttcgggtgtttgtttcttgtttaataaattgtatcaaaagtttttgaatcgtatatgacttccaaaaacactgaat |
3822505 |
T |
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| Q |
125 |
ccgttcaattttttcttgattcaattcattcttcatccagaattgcc |
171 |
Q |
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| T |
3822506 |
tgattcaaagttttcttgattcgattcattctgcatccaaaattgcc |
3822552 |
T |
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