View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11374_low_5 (Length: 713)
Name: NF11374_low_5
Description: NF11374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11374_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 22 - 475
Target Start/End: Original strand, 15191503 - 15191957
Alignment:
| Q |
22 |
tgtgcagtgaaacactgtcgttatgccattgaaccgcaaaaaaccattaacccgcacaaactactccctgctatcattgcttggacccacacaaactctt |
121 |
Q |
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| T |
15191503 |
tgtgcaatgaaacactgttttcatgccattgaaccgcaaaaaaccattaacccgcacaaactagtgcctgctatcattgcttggacccgcacaaactctt |
15191602 |
T |
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| Q |
122 |
caattttttat-aattatacaacaattagttgattccacaagctcgcggaaagaaaagcaagtaaatttcaaacacagatcaatcaaacttcaatctaaa |
220 |
Q |
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| T |
15191603 |
caattttttattaattatacaacaattagttgattccacaagctcgcggaaagaaaagcaagtaaatttcaaacacagattaatcaaacttcaatctaaa |
15191702 |
T |
|
| Q |
221 |
catgacctgatacatctactatctactattctatgcaaaacagaagctttctaactgaagtacacatcaaaagttaaaatatcagcaataatgattcata |
320 |
Q |
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| T |
15191703 |
catgacctgatacgtctactatctactattctatgcaaaacagaagctttctaactgaagtacacatcaaaagttaaaatatcagcaataatgattcata |
15191802 |
T |
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| Q |
321 |
atttaaccaaagaagaaaggnnnnnnnnnnnnnccgaacttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtact |
420 |
Q |
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| T |
15191803 |
atttaaccaaagaagaaaggaaaaagaaaaaaaccgaacttgcaatgacgaagagactcgtagcgttcttgctcattcataacagttttacccttgtact |
15191902 |
T |
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| Q |
421 |
tgtgtgtgatctcatcactgcagcatccaacaaggagatatgtgtttggaaacct |
475 |
Q |
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| T |
15191903 |
tgtgtgtgatctcatcactgcagcatccaacaaggagatatgtattcggaaacct |
15191957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 601
Target Start/End: Original strand, 15192056 - 15192086
Alignment:
| Q |
571 |
ccatagcaaaattcaacatgccactgaaaac |
601 |
Q |
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| T |
15192056 |
ccatagcaaaattcaacatgccactgaaaac |
15192086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 24188708 - 24188610
Alignment:
| Q |
358 |
acttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaagga |
456 |
Q |
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| T |
24188708 |
acttgcagtgacgaagggactcatagcgttcttgctcattcataacagttttacccttttacttgtgtgtgatctcatcactgcagcatccaacaagga |
24188610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 472
Target Start/End: Original strand, 36915998 - 36916112
Alignment:
| Q |
358 |
acttgcaatgacgaagagactcatagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaaggag |
457 |
Q |
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||||||| ||||| ||||||||||| ||||| | ||| ||||||| ||||| || || ||||| ||||| | | |||| ||||||||||||||||| || |
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| T |
36915998 |
acttgcagtgacggagagactcataacgttcatcttcagtcataaccgttttgcctttatacttatgtgtcaccgcatcgctgcagcatccaacaagaag |
36916097 |
T |
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| Q |
458 |
atatgtgtttggaaa |
472 |
Q |
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| T |
36916098 |
atacgtgttcggaaa |
36916112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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